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      Intergenerational protective anti-gut commensal immunoglobulin G originates in early life

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          Significance

          This work describes the time-limited, early-life, physiologic development of protective maternal anti-gut commensal IgGs. The antibodies persist after weaning and are passed to the next generation. Perturbations during the mother’s infancy lead to a loss of protection against infections of enteric origin in their offspring. These long-lasting plasma cells form in the intestinal immune compartment and provide passive protection to the offspring during enteric infections by preventing secondary systemic dissemination of gut commensals.

          Abstract

          Maternal immunoglobulins of the class G (IgGs) protect offspring from enteric infection, but when, where, and how these antibodies are physiologically generated and confer protection remains enigmatic. We found that circulating IgGs in adult mice preferentially bind early-life gut commensal bacteria over their own adult gut commensal bacteria. IgG-secreting plasma cells specific for early-life gut bacteria appear in the intestine soon after weaning, where they remain into adulthood. Manipulating exposure to gut bacteria or plasma cell development before, but not after, weaning reduced IgG-secreting plasma cells targeting early-life gut bacteria throughout life. Further, the development of this anti-gut commensal IgG response coincides with the early-life interval in which goblet cell–associated antigen passages (GAPs) are present in the colon. Offspring of dams “perturbed” by B cell ablation or reduced bacterial exposure in early life were more susceptible to enteric pathogen challenge. In contrast to current concepts, protective maternal IgGs targeted translocating gut commensals in the offspring, not the enteric pathogen. These early-life events affecting anti-commensal IgG production have intergenerational effects for protection of the offspring.

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          Most cited references59

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          Fast gapped-read alignment with Bowtie 2.

          As the rate of sequencing increases, greater throughput is demanded from read aligners. The full-text minute index is often used to make alignment very fast and memory-efficient, but the approach is ill-suited to finding longer, gapped alignments. Bowtie 2 combines the strengths of the full-text minute index with the flexibility and speed of hardware-accelerated dynamic programming algorithms to achieve a combination of high speed, sensitivity and accuracy.
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            MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

            We report a major update of the MAFFT multiple sequence alignment program. This version has several new features, including options for adding unaligned sequences into an existing alignment, adjustment of direction in nucleotide alignment, constrained alignment and parallel processing, which were implemented after the previous major update. This report shows actual examples to explain how these features work, alone and in combination. Some examples incorrectly aligned by MAFFT are also shown to clarify its limitations. We discuss how to avoid misalignments, and our ongoing efforts to overcome such limitations.
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              DADA2: High resolution sample inference from Illumina amplicon data

              We present DADA2, a software package that models and corrects Illumina-sequenced amplicon errors. DADA2 infers sample sequences exactly, without coarse-graining into OTUs, and resolves differences of as little as one nucleotide. In several mock communities DADA2 identified more real variants and output fewer spurious sequences than other methods. We applied DADA2 to vaginal samples from a cohort of pregnant women, revealing a diversity of previously undetected Lactobacillus crispatus variants.
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                Author and article information

                Contributors
                Journal
                Proc Natl Acad Sci U S A
                Proc Natl Acad Sci U S A
                PNAS
                Proceedings of the National Academy of Sciences of the United States of America
                National Academy of Sciences
                0027-8424
                1091-6490
                22 March 2024
                26 March 2024
                22 March 2024
                : 121
                : 13
                : e2309994121
                Affiliations
                [1] aDepartment of Pediatrics, Division of Gastroenterology, Hepatology and Nutrition, Washington University School of Medicine in St. Louis , St. Louis, MO 63110
                [2] bDepartment of Internal Medicine, Division of Gastroenterology, Washington University School of Medicine in St. Louis , St. Louis, MO 63110
                [3] cDepartment of Molecular Microbiology, Washington University School of Medicine in St. Louis , St. Louis, MO 63110
                Author notes
                1To whom correspondence may be addressed. Email: b.a.rusconi@ 123456wustl.edu .

                Edited by Lora Hooper, University of Texas Southwestern Medical Center, Dallas, TX; received June 15, 2023; accepted February 16, 2024

                Author information
                https://orcid.org/0000-0002-6785-687X
                https://orcid.org/0009-0004-1695-2636
                https://orcid.org/0000-0003-3778-9968
                https://orcid.org/0000-0003-2996-2783
                https://orcid.org/0000-0002-4152-5191
                Article
                202309994
                10.1073/pnas.2309994121
                10990157
                38517976
                462e93a9-36e9-4af3-aada-4d9d8491e814
                Copyright © 2024 the Author(s). Published by PNAS.

                This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND).

                History
                : 15 June 2023
                : 16 February 2024
                Page count
                Pages: 11, Words: 8878
                Funding
                Funded by: HHS | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK), FundRef 100000062;
                Award ID: K01DK125606
                Award Recipient : Brigida Rusconi Award Recipient : Rodney D. Newberry Award Recipient : Phillip I Tarr
                Funded by: HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID), FundRef 100000060;
                Award ID: U01AI163073
                Award Recipient : Rodney D. Newberry Award Recipient : Phillip I Tarr
                Funded by: HHS | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK), FundRef 100000062;
                Award ID: R01DK097317
                Award Recipient : Brigida Rusconi Award Recipient : Rodney D. Newberry Award Recipient : Phillip I Tarr
                Funded by: HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID), FundRef 100000060;
                Award ID: R01AI136515
                Award Recipient : Rodney D. Newberry Award Recipient : Phillip I Tarr
                Funded by: HHS | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK), FundRef 100000062;
                Award ID: P30DK052574
                Award Recipient : Brigida Rusconi Award Recipient : Rodney D. Newberry Award Recipient : Phillip I Tarr
                Categories
                dataset, Dataset
                research-article, Research Article
                immun, Immunology and Inflammation
                420
                Biological Sciences
                Immunology and Inflammation

                anti-commensal,igg,neonatal,infection,long-lived plasma cell

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