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      Cyclipostins and Cyclophostin analogs as promising compounds in the fight against tuberculosis

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          Abstract

          A new class of Cyclophostin and Cyclipostins ( CyC) analogs have been investigated against Mycobacterium tuberculosis H37Rv ( M. tb) grown either in broth medium or inside macrophages. Our compounds displayed a diversity of action by acting either on extracellular M. tb bacterial growth only, or both intracellularly on infected macrophages as well as extracellularly on bacterial growth with very low toxicity towards host macrophages. Among the eight potential CyCs identified, CyC 17 exhibited the best extracellular antitubercular activity (MIC 50 = 500 nM). This compound was selected and further used in a competitive labelling/enrichment assay against the activity-based probe Desthiobiotin-FP in order to identify its putative target(s). This approach, combined with mass spectrometry, identified 23 potential candidates, most of them being serine or cysteine enzymes involved in M. tb lipid metabolism and/or in cell wall biosynthesis. Among them, Ag85A, CaeA and HsaD, have previously been reported as essential for in vitro growth of M. tb and/or survival and persistence in macrophages. Overall, our findings support the assumption that CyC 17 may thus represent a novel class of multi-target inhibitor leading to the arrest of M. tb growth through a cumulative inhibition of a large number of Ser- and Cys-containing enzymes participating in important physiological processes.

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          Genes required for mycobacterial growth defined by high density mutagenesis.

          Despite over a century of research, tuberculosis remains a leading cause of infectious death worldwide. Faced with increasing rates of drug resistance, the identification of genes that are required for the growth of this organism should provide new targets for the design of antimycobacterial agents. Here, we describe the use of transposon site hybridization (TraSH) to comprehensively identify the genes required by the causative agent, Mycobacterium tuberculosis, for optimal growth. These genes include those that can be assigned to essential pathways as well as many of unknown function. The genes important for the growth of M. tuberculosis are largely conserved in the degenerate genome of the leprosy bacillus, Mycobacterium leprae, indicating that non-essential functions have been selectively lost since this bacterium diverged from other mycobacteria. In contrast, a surprisingly high proportion of these genes lack identifiable orthologues in other bacteria, suggesting that the minimal gene set required for survival varies greatly between organisms with different evolutionary histories.
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            Resazurin microtiter assay plate: simple and inexpensive method for detection of drug resistance in Mycobacterium tuberculosis.

            A method for detecting multidrug-resistant Mycobacterium tuberculosis by using a reduction of resazurin is described. Eighty clinical isolates were evaluated against isoniazid and rifampin; results at 7 days were compared with those of the proportion method. Specificity and sensitivity were excellent. The method is simple, inexpensive, and rapid and might be used with other antituberculosis drugs.
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              Activity-based protein profiling: from enzyme chemistry to proteomic chemistry.

              Genome sequencing projects have provided researchers with a complete inventory of the predicted proteins produced by eukaryotic and prokaryotic organisms. Assignment of functions to these proteins represents one of the principal challenges for the field of proteomics. Activity-based protein profiling (ABPP) has emerged as a powerful chemical proteomic strategy to characterize enzyme function directly in native biological systems on a global scale. Here, we review the basic technology of ABPP, the enzyme classes addressable by this method, and the biological discoveries attributable to its application.
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                Author and article information

                Contributors
                jfcavalier@imm.cnrs.fr
                canaan@imm.cnrs.fr
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                18 September 2017
                18 September 2017
                2017
                : 7
                : 11751
                Affiliations
                [1 ]ISNI 0000 0001 2176 4817, GRID grid.5399.6, Aix-Marseille Univ, CNRS, EIPL, ; IMM FR3479 Marseille, France
                [2 ]ISNI 0000000114809378, GRID grid.266757.7, Department of Chemistry and Biochemistry, , University of Missouri–St. Louis, One University Boulevard, ; St. Louis, Missouri 63121 United States
                [3 ]Aix Marseille Univ, CNRS, Institut de Microbiologie de la Méditerranée FR3479, Plate-forme Marseille Protéomique (MaP), Marseille, France
                [4 ]ISNI 0000 0001 2186 1211, GRID grid.4461.7, INSERM U1019 CNRS-UMR 8204, Institut Pasteur de Lille, , Université de Lille, ; 1 rue du Professeur Calmette, Lille, France
                [5 ]ISNI 0000 0001 2097 0141, GRID grid.121334.6, Institut de Recherche en Infectiologie de Montpellier (IRIM), CNRS, UMR 9004, , Université de Montpellier, ; Montpellier, France
                [6 ]GRID grid.457377.5, IRIM, INSERM, ; 34293 Montpellier, France
                [7 ]ISNI 0000 0004 0494 4850, GRID grid.418549.5, Present Address: Tuberculosis Research Laboratory, Institut Pasteur Korea, ; Seongnam-si, Gyeonggi-do 13488 Republic of Korea
                Author information
                http://orcid.org/0000-0002-6604-4458
                http://orcid.org/0000-0003-0991-7344
                http://orcid.org/0000-0003-0864-8314
                http://orcid.org/0000-0001-7478-300X
                Article
                11843
                10.1038/s41598-017-11843-4
                5603573
                28924204
                43c3983b-8f4d-481a-8a3c-3dbb11924ad3
                © The Author(s) 2017

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 5 June 2017
                : 30 August 2017
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