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      Anaerobic Dechlorination by a Humin-Dependent Pentachlorophenol-Dechlorinating Consortium under Autotrophic Conditions Induced by Homoacetogenesis

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          Abstract

          Anoxic aquifers suffer from energy limitations due to the unavailability of organic substrates, as dictated by hydrogen (H 2) for various electron-accepting processes. This deficiency often results in the accumulation of persistent organic pollutants, where bioremediation using organic compounds often leads to secondary contamination. This study involves the reductive dechlorination of pentachlorophenol (PCP) by dechlorinators that do not use H 2 directly, but rather through a reduced state of humin—a solid-phase humic substance—as the extracellular electron donor, which requires an organic donor such as formate, lactate, etc. This shortcoming was addressed by the development of an anaerobic mixed culture that was capable of reductively dechlorinating PCP using humin under autotrophic conditions induced by homoacetogenesis. Here, H 2 was used for carbon-dioxide fixation to acetate; the acetate produced was used for the reduction of humin; and consequently used for dechlorination through reduced humin. The 16SrRNA gene sequencing analysis showed Dehalobacter and Dehalobacterium as the possible dechlorinators, while Clostridium and Oxobacter were identified as the homoacetogens. Thus, this work contributes to the development of an anaerobic consortium that balanced H 2 dependency, where efficiency of humin reduction extends the applicability of anaerobic microbial remediation in aquifers through autotrophy, syntrophy, and reductive dechlorination.

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          Deciphering Diversity Indices for a Better Understanding of Microbial Communities

          The past decades have been a golden era during which great tasks were accomplished in the field of microbiology, including food microbiology. In the past, culture-dependent methods have been the primary choice to investigate bacterial diversity. However, using cultureindependent high-throughput sequencing of 16S rRNA genes has greatly facilitated studies exploring the microbial compositions and dynamics associated with health and diseases. These culture-independent DNA-based studies generate large-scale data sets that describe the microbial composition of a certain niche. Consequently, understanding microbial diversity becomes of greater importance when investigating the composition, function, and dynamics of the microbiota associated with health and diseases. Even though there is no general agreement on which diversity index is the best to use, diversity indices have been used to compare the diversity among samples and between treatments with controls. Tools such as the Shannon- Weaver index and Simpson index can be used to describe population diversity in samples. The purpose of this review is to explain the principles of diversity indices, such as Shannon- Weaver and Simpson, to aid general microbiologists in better understanding bacterial communities. In this review, important questions concerning microbial diversity are addressed. Information from this review should facilitate evidence-based strategies to explore microbial communities.
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            Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids

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              The capacity of hydrogenotrophic anaerobic bacteria to compete for traces of hydrogen depends on the redox potential of the terminal electron acceptor

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                Author and article information

                Journal
                Int J Environ Res Public Health
                Int J Environ Res Public Health
                ijerph
                International Journal of Environmental Research and Public Health
                MDPI
                1661-7827
                1660-4601
                11 August 2019
                August 2019
                : 16
                : 16
                : 2873
                Affiliations
                [1 ]Graduate School of Engineering, Nagoya University, Nagoya 464-8603, Japan
                [2 ]National Institute for Land and Infrastructure Management, Tsukuba 305-0804, Japan
                [3 ]Institute of Materials and Systems for Sustainability, Nagoya University, Nagoya 464-8603, Japan
                Author notes
                [* ]Correspondence: katayama.arata@ 123456nagoya-u.jp ; Tel.: +81-(0)52-789-5856
                Author information
                https://orcid.org/0000-0002-4051-0123
                https://orcid.org/0000-0001-9688-4725
                Article
                ijerph-16-02873
                10.3390/ijerph16162873
                6720667
                31405258
                3dbf6bb0-1054-4dcf-bc60-364b7a4506d3
                © 2019 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 21 July 2019
                : 09 August 2019
                Categories
                Article

                Public health
                autotrophic,h2,co2,humin,acetogens,reductive dechlorination,homoacetogenesis
                Public health
                autotrophic, h2, co2, humin, acetogens, reductive dechlorination, homoacetogenesis

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