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      Antisense oligonucleotides and their applications in rare neurological diseases

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          Abstract

          Rare diseases affect almost 500 million people globally, predominantly impacting children and often leading to significantly impaired quality of life and high treatment costs. While significant contributions have been made to develop effective treatments for those with rare diseases, more rapid drug discovery strategies are needed. Therapeutic antisense oligonucleotides can modulate target gene expression with high specificity through various mechanisms determined by base sequences and chemical modifications; and have shown efficacy in clinical trials for a few rare neurological conditions. Therefore, this review will focus on the applications of antisense oligonucleotides, in particular splice-switching antisense oligomers as promising therapeutics for rare neurological diseases, with key examples of Duchenne muscular dystrophy and spinal muscular atrophy. Challenges and future perspectives in developing antisense therapeutics for rare conditions including target discovery, antisense chemical modifications, animal models for therapeutic validations, and clinical trial designs will also be briefly discussed.

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          Most cited references165

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          Nusinersen versus Sham Control in Infantile-Onset Spinal Muscular Atrophy

          New England Journal of Medicine, 377(18), 1723-1732
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            Estimating cumulative point prevalence of rare diseases: analysis of the Orphanet database

            Rare diseases, an emerging global public health priority, require an evidence-based estimate of the global point prevalence to inform public policy. We used the publicly available epidemiological data in the Orphanet database to calculate such a prevalence estimate. Overall, Orphanet contains information on 6172 unique rare diseases; 71.9% of which are genetic and 69.9% which are exclusively pediatric onset. Global point prevalence was calculated using rare disease prevalence data for predefined geographic regions from the ‘Orphanet Epidemiological file’ (http://www.orphadata.org/cgi-bin/epidemio.html). Of the 5304 diseases defined by point prevalence, 84.5% of those analysed have a point prevalence of <1/1 000 000. However 77.3–80.7% of the population burden of rare diseases is attributable to the 4.2% (n = 149) diseases in the most common prevalence range (1–5 per 10 000). Consequently national definitions of ‘Rare Diseases’ (ranging from prevalence of 5 to 80 per 100 000) represent a variable number of rare disease patients despite sharing the majority of rare disease in their scope. Our analysis yields a conservative, evidence-based estimate for the population prevalence of rare diseases of 3.5–5.9%, which equates to 263–446 million persons affected globally at any point in time. This figure is derived from data from 67.6% of the prevalent rare diseases; using the European definition of 5 per 10 000; and excluding rare cancers, infectious diseases, and poisonings. Future registry research and the implementation of rare disease codification in healthcare systems will further refine the estimates.
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              Patient-Customized Oligonucleotide Therapy for a Rare Genetic Disease

              Genome sequencing is often pivotal in the diagnosis of rare diseases, but many of these conditions lack specific treatments. We describe how molecular diagnosis of a rare, fatal neurodegenerative condition led to the rational design, testing, and manufacture of milasen, a splice-modulating antisense oligonucleotide drug tailored to a particular patient. Proof-of-concept experiments in cell lines from the patient served as the basis for launching an “N-of-1” study of milasen within 1 year after first contact with the patient. There were no serious adverse events, and treatment was associated with objective reduction in seizures (determined by electroencephalography and parental reporting). This study offers a possible template for the rapid development of patient-customized treatments. (Funded by Mila’s Miracle Foundation and others.)
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                Author and article information

                Contributors
                URI : http://loop.frontiersin.org/people/2713507/overviewRole: Role:
                URI : http://loop.frontiersin.org/people/821158/overviewRole: Role:
                URI : http://loop.frontiersin.org/people/1073997/overviewRole: Role: Role: Role:
                URI : http://loop.frontiersin.org/people/2703062/overviewRole: Role: Role: Role:
                Journal
                Front Neurosci
                Front Neurosci
                Front. Neurosci.
                Frontiers in Neuroscience
                Frontiers Media S.A.
                1662-4548
                1662-453X
                23 September 2024
                2024
                : 18
                : 1414658
                Affiliations
                [1] 1School of Human Sciences, The University of Western Australia , Crawley, WA, Australia
                [2] 2Perron Institute for Neurological and Translational Science, The University of Western Australia , Nedlands, WA, Australia
                [3] 3Centre for Molecular Medicine and Innovative Therapeutics, Health Futures Institute, Murdoch University , Murdoch, WA, Australia
                Author notes

                Edited by: Samie Jaffrey, Cornell University, United States

                Reviewed by: Ravindra N. Singh, Iowa State University, United States

                Daniel Norris, Ionis Pharmaceuticals, Inc., United States

                *Correspondence: Dunhui Li, dunhui.li@ 123456murdoch.edu.au
                Article
                10.3389/fnins.2024.1414658
                11456401
                39376536
                3cec8431-324c-420e-ba26-766d58da56e2
                Copyright © 2024 McDowall, Aung-Htut, Wilton and Li.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 09 April 2024
                : 20 August 2024
                Page count
                Figures: 1, Tables: 1, Equations: 0, References: 167, Pages: 13, Words: 11740
                Funding
                The author(s) declare that no financial support was received for the research, authorship, and/or publication of the article.
                Categories
                Neuroscience
                Review
                Custom metadata
                Translational Neuroscience

                Neurosciences
                rare diseases,antisense oligonucleotides,treatments,therapeutics rare disease,oligonucleotide,precision therapeutics

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