A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data.

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Abstract

Open-source bacterial genome assembly remains inaccessible to many biologists because of its complexity. Few software solutions exist that are capable of automating all steps in the process of de novo genome assembly from Illumina data.

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Journal

Journal ID (iso-abbrev): Bioinformatics

Title: Bioinformatics (Oxford, England)

ISSN (Electronic): 1367-4811

ISSN (Print): 1367-4803

Publication date (Electronic): Feb 15 2015

Volume: 31

Issue: 4

Affiliations

[1 ] Genome Center, University of California Davis, Davis, CA 95616, USA and ithree institute, University of Technology Sydney, New South Wales, Australia.

Article

Publisher Item ID: btu661

DOI: 10.1093/bioinformatics/btu661

PubMed ID: 25338718

SO-VID: 3a32e78c-4b80-4f9c-abb4-9aedf01b0423

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