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      The N-terminal domains of TRF1 and TRF2 regulate their ability to condense telomeric DNA

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          Abstract

          TRF1 and TRF2 are key proteins in human telomeres, which, despite their similarities, have different behaviors upon DNA binding. Previous work has shown that unlike TRF1, TRF2 condenses telomeric, thus creating consequential negative torsion on the adjacent DNA, a property that is thought to lead to the stimulation of single-strand invasion and was proposed to favor telomeric DNA looping. In this report, we show that these activities, originating from the central TRFH domain of TRF2, are also displayed by the TRFH domain of TRF1 but are repressed in the full-length protein by the presence of an acidic domain at the N-terminus. Strikingly, a similar repression is observed on TRF2 through the binding of a TERRA-like RNA molecule to the N-terminus of TRF2. Phylogenetic and biochemical studies suggest that the N-terminal domains of TRF proteins originate from a gradual extension of the coding sequences of a duplicated ancestral gene with a consequential progressive alteration of the biochemical properties of these proteins. Overall, these data suggest that the N-termini of TRF1 and TRF2 have evolved to finely regulate their ability to condense DNA.

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          Most cited references25

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          SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny.

          SEAVIEW and PHYLO_WIN are two graphic tools for X Windows-Unix computers dedicated to sequence alignment and molecular phylogenetics. SEAVIEW is a sequence alignment editor allowing manual or automatic alignment through an interface with CLUSTALW program. Alignment of large sequences with extensive length differences is made easier by a dot-plot-based routine. The PHYLO_WIN program allows phylogenetic tree building according to most usual methods (neighbor joining with numerous distance estimates, maximum parsimony, maximum likelihood), and a bootstrap analysis with any of them. Reconstructed trees can be drawn, edited, printed, stored, evaluated according to numerous criteria. Taxonomic species groups and sets of conserved regions can be defined by mouse and stored into sequence files, thus avoiding multiple data files. Both tools are entirely mouse driven. On-line help makes them easy to use. They are freely available by anonymous ftp at biom3.univ-lyon1.fr/pub/ mol_phylogeny or http:@acnuc.univ-lyon1.fr/, or by e-mail to galtier@biomserv.univ-lyon1.fr.
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            TERRA RNA binding to TRF2 facilitates heterochromatin formation and ORC recruitment at telomeres.

            Telomere-repeat-encoding RNA (referred to as TERRA) has been identified as a potential component of yeast and mammalian telomeres. We show here that TERRA RNA interacts with several telomere-associated proteins, including telomere repeat factors 1 (TRF1) and 2 (TRF2), subunits of the origin recognition complex (ORC), heterochromatin protein 1 (HP1), histone H3 trimethyl K9 (H3 K9me3), and members of the DNA-damage-sensing pathway. siRNA depletion of TERRA caused an increase in telomere dysfunction-induced foci, aberrations in metaphase telomeres, and a loss of histone H3 K9me3 and ORC at telomere repeat DNA. Previous studies found that TRF2 amino-terminal GAR domain recruited ORC to telomeres. We now show that TERRA RNA can interact directly with the TRF2 GAR and ORC1 to form a stable ternary complex. We conclude that TERRA facilitates TRF2 interaction with ORC and plays a central role in telomere structural maintenance and heterochromatin formation.
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              Homologous recombination generates T-loop-sized deletions at human telomeres.

              The t-loop structure of mammalian telomeres is thought to repress nonhomologous end joining (NHEJ) at natural chromosome ends. Telomere NHEJ occurs upon loss of TRF2, a telomeric protein implicated in t-loop formation. Here we describe a mutant allele of TRF2, TRF2DeltaB, that suppressed NHEJ but induced catastrophic deletions of telomeric DNA. The deletion events were stochastic and occurred rapidly, generating dramatically shortened telomeres that were accompanied by a DNA damage response and induction of senescence. TRF2DeltaB-induced deletions depended on XRCC3, a protein implicated in Holliday junction resolution, and created t-loop-sized telomeric circles. These telomeric circles were also detected in unperturbed cells and suggested that t-loop deletion by homologous recombination (HR) might contribute to telomere attrition. Human ALT cells had abundant telomeric circles, pointing to frequent t-loop HR events that could promote rolling circle replication of telomeres in the absence of telomerase. These findings show that t-loop deletion by HR influences the integrity and dynamics of mammalian telomeres.
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                Author and article information

                Journal
                Nucleic Acids Res
                Nucleic Acids Res
                nar
                nar
                Nucleic Acids Research
                Oxford University Press
                0305-1048
                1362-4962
                March 2012
                March 2012
                1 December 2011
                1 December 2011
                : 40
                : 6
                : 2566-2576
                Affiliations
                1Université de Lyon, Laboratoire Joliot-Curie, CNRS USR3010, Ecole Normale Supérieure de Lyon, 46, allée d'Italie, F-69364 Lyon, 2Université de Lyon, Laboratoire de Biologie Moléculaire de la cellule, CNRS UMR5239, Ecole Normale Supérieure de Lyon, 46, allée d'Italie, F-69364 Lyon, 3University of Nice, Laboratory of Biology and Pathology of Genomes, UMR 6267 CNRS U998 INSERM, 28 avenue Valombrose, Faculté de Médecine, F-06107 Nice, 4Laboratoire de Physique, CNRS UMR5672, Ecole Normale Supérieure de Lyon, 46, allée d'Italie, F-69364 Lyon, 5CEA/DSV/IBiTec-S/SB2SM, Laboratoire de Biologie Structurale et Radiobiologie, bat 144, CEA Saclay, F-91191 Gif-sur-Yvette, 6Institut de Génomique Fonctionnelle de Lyon, CNRS UMR5242 Ecole Normale Supérieure de Lyon, 46, allée d'Italie, F-69364 Lyon, 7IFR 128, BioSciences Gerland – Lyon Sud, Plateau de Production et Analyse des Protéines, IBCP, CNRS UMR 5086, 21, avenue Tony Garnier, F-69367 Lyon and 8Department of Medical Genetics, CHU of Nice, Nice, France
                Author notes
                *To whom correspondence should be addressed. Tel: +33 4 93377016; Fax: +33 493377092; Email: giraud-panis@ 123456unice.fr

                The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors.

                Present addresses: Fabien Montel, Institut Curie, Laboratoire de Physico-Chimie CNRS UMR168, 11 rue Pierre et M. Curie F-75005 Paris, France.

                Simon Amiard, Université Clermont-Ferrand, 24 av. des Landais, F-61177 Aubière, France.

                Article
                gkr1116
                10.1093/nar/gkr1116
                3315331
                22139926
                31c0138c-6661-43a3-9a1c-fcde2ce0aa08
                © The Author(s) 2011. Published by Oxford University Press.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 20 July 2011
                : 2 November 2011
                : 7 November 2011
                Page count
                Pages: 11
                Categories
                Molecular Biology

                Genetics
                Genetics

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