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      A class of secreted mammalian peptides with potential to expand cell-cell communication

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          Summary

          Peptide hormones and neuropeptides are fundamental signaling molecules that control diverse aspects of mammalian homeostasis and physiology. Here we demonstrate the endogenous presence of a sequence diverse class of orphan, blood-borne peptides that we call “capped peptides.” Capped peptides are fragments of secreted proteins and defined by the presence of two post-translational modifications – N-terminal pyroglutamylation and C-terminal amidation – which function as chemical “caps” of the intervening sequence. Capped peptides share many regulatory characteristics in common with that of other signaling peptides, including dynamic regulation in blood plasma by diverse environmental and physiologic stimuli. One capped peptide, CAP-TAC1, is a tachykinin neuropeptide-like molecule and a nanomolar agonist of multiple mammalian tachykinin receptors. A second capped peptide, CAP-GDF15, is a 12-mer peptide that reduces food intake and body weight. Capped peptides therefore define a largely unexplored class of circulating molecules with potential to regulate cell-cell communication in mammalian physiology.

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          Most cited references35

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          UniProt: the Universal Protein Knowledgebase in 2023

          (2022)
          The aim of the UniProt Knowledgebase is to provide users with a comprehensive, high-quality and freely accessible set of protein sequences annotated with functional information. In this publication we describe enhancements made to our data processing pipeline and to our website to adapt to an ever-increasing information content. The number of sequences in UniProtKB has risen to over 227 million and we are working towards including a reference proteome for each taxonomic group. We continue to extract detailed annotations from the literature to update or create reviewed entries, while unreviewed entries are supplemented with annotations provided by automated systems using a variety of machine-learning techniques. In addition, the scientific community continues their contributions of publications and annotations to UniProt entries of their interest. Finally, we describe our new website ( https://www.uniprot.org/ ), designed to enhance our users’ experience and make our data easily accessible to the research community. This interface includes access to AlphaFold structures for more than 85% of all entries as well as improved visualisations for subcellular localisation of proteins.
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            Once-Weekly Semaglutide in Adults with Overweight or Obesity

            Obesity is a global health challenge with few pharmacologic options. Whether adults with obesity can achieve weight loss with once-weekly semaglutide at a dose of 2.4 mg as an adjunct to lifestyle intervention has not been confirmed.
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              Search and sequence analysis tools services from EMBL-EBI in 2022

              The EMBL-EBI search and sequence analysis tools frameworks provide integrated access to EMBL-EBI’s data resources and core bioinformatics analytical tools. EBI Search ( https://www.ebi.ac.uk/ebisearch ) provides a full-text search engine across nearly 5 billion entries, while the Job Dispatcher tools framework ( https://www.ebi.ac.uk/services ) enables the scientific community to perform a diverse range of sequence analysis using popular bioinformatics applications. Both allow users to interact through user-friendly web applications, as well as via RESTful and SOAP-based APIs. Here, we describe recent improvements to these services and updates made to accommodate the increasing data requirements during the COVID-19 pandemic. Graphical Abstract Overview of the tools and data resources provided by EBI Search and Job Dispatcher services accessible via their webpage and programmatic interfaces.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: MethodologyRole: SoftwareRole: InvestigationRole: Writing – Original DraftRole: Writing – Review & Editing
                Role: InvestigationRole: Writing – Review & Editing
                Role: InvestigationRole: Writing – Review & Editing
                Role: InvestigationRole: Writing – Review & EditingRole: Funding Acquisition
                Role: InvestigationRole: Writing – Review & Editing
                Role: InvestigationRole: Writing – Review & Editing
                Role: ConceptualizationRole: Writing – Review & EditingRole: Funding Acquisition
                Role: ConceptualizationRole: Writing – Original DraftRole: Writing – Review & EditingRole: SupervisionRole: Funding Acquisition
                Journal
                bioRxiv
                BIORXIV
                bioRxiv
                Cold Spring Harbor Laboratory
                07 June 2023
                : 2023.06.02.543503
                Affiliations
                [1 ]Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
                [2 ]Department of Chemistry, Stanford University, Stanford, CA, USA.
                [3 ]Department of Biology, Stanford University, Stanford, CA, USA.
                [4 ]Sarafan ChEM-H, Stanford University, Stanford, CA, USA.
                [5 ]Stanford Diabetes Research Center, Stanford University, Stanford, CA, USA.
                [6 ]Wu Tsai Human Performance Alliance, Stanford University, Stanford, CA, USA.
                Author notes
                [* ]Corresponding author, jzlong@ 123456stanford.edu
                Article
                10.1101/2023.06.02.543503
                10274650
                37333131
                31ab3104-212f-4af2-8cad-8160d43007d1

                This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.

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                peptides,hormones,neuropeptides,signaling,physiology,mass spectrometry,genomic,tachykinin,intercellular

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