Pragathi B. Shridhar: Role: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole:
Writing – original draft
Isha R. Patel: Role: Data curationRole: Formal analysisRole: Methodology
Jayanthi Gangiredla: Role: Data curationRole: Formal analysisRole: Software
Lance W. Noll: Role: Formal analysisRole: Methodology
Xiaorong Shi: Role: InvestigationRole: Methodology
Jianfa Bai: Role: Formal analysisRole: InvestigationRole: Writing – review & editing
Christopher A. Elkins: Role: MethodologyRole: Writing – review & editing
Nancy Strockbine: Role: InvestigationRole: Resources
T. G. Nagaraja:
ORCID: http://orcid.org/0000-0002-0899-878X
Role: ConceptualizationRole: InvestigationRole: MethodologyRole: Project administrationRole:
SupervisionRole: Writing – original draft
Chitrita DebRoy: Role: Editor
Journal ID (nlm-ta): PLoS One
Journal ID (iso-abbrev): PLoS ONE
Journal ID (publisher-id): plos
Journal ID (pmc): plosone
Title:
PLoS ONE
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Electronic):
1932-6203
Publication date
(Electronic):
30
April
2018
Publication date Collection: 2018
Volume: 13
Issue: 4
Electronic Location Identifier: e0196490
Affiliations
[1
]
Department of Diagnostic Medicine and Pathobiology
[2
]
Division of Molecular Biology, Center for Food Safety and Applied Nutrition, United
States Food and Drug Administration, Laurel, Maryland, United States of America
[3
]
Veterinary Diagnostic Laboratory Kansas State University, Manhattan, Kansas, United
States of America
[4
]
Division of Foodborne, Waterborne, and Environmental Diseases, National Center for
Emerging and Zoonotic Infectious Diseases, CDC, Atlanta, Georgia, United States of
America
The Pennsylvania State University, UNITED STATES
Author notes
Competing Interests: The authors have declared that no competing interests exist.
Author information
Article
Publisher ID:
PONE-D-17-45227
DOI: 10.1371/journal.pone.0196490
PMC ID: 5927410
PubMed ID: 29708991
SO-VID: 30764aa7-a9b7-46ec-9c98-5a510040ba24
License:
This is an open access article, free of all copyright, and may be freely reproduced,
distributed, transmitted, modified, built upon, or otherwise used by anyone for any
lawful purpose. The work is made available under the
Creative Commons CC0 public domain dedication.
Funded by: funder-id http://dx.doi.org/10.13039/100005825, National Institute of Food and Agriculture;
Award ID: 2012-68003-30155
Award Recipient
:
ORCID: http://orcid.org/0000-0002-0899-878X
T. G. Nagaraja
This material is based upon work that is supported by the National Institute of Food
and Agriculture, U. S. Department of Agriculture, under award number 2012-68003-30155.
The funders had no role in the study design, data collection and analyses, preparation
of the manuscript or decision to publish.
Subject:
Research Article
Subject:
Biology and Life Sciences
Subject:
Organisms
Subject:
Eukaryota
Subject:
Animals
Subject:
Vertebrates
Subject:
Amniotes
Subject:
Mammals
Subject:
Bovines
Subject:
Cattle
Subject:
Biology and Life Sciences
Subject:
Organisms
Subject:
Eukaryota
Subject:
Animals
Subject:
Vertebrates
Subject:
Amniotes
Subject:
Mammals
Subject:
Ruminants
Subject:
Cattle
Subject:
Biology and Life Sciences
Subject:
Organisms
Subject:
Eukaryota
Subject:
Animals
Subject:
Vertebrates
Subject:
Amniotes
Subject:
Mammals
Subject:
Bovines
Subject:
Research and Analysis Methods
Subject:
Experimental Organism Systems
Subject:
Model Organisms
Subject:
Escherichia Coli
Subject:
Research and Analysis Methods
Subject:
Model Organisms
Subject:
Escherichia Coli
Subject:
Biology and Life Sciences
Subject:
Microbiology
Subject:
Medical Microbiology
Subject:
Microbial Pathogens
Subject:
Bacterial Pathogens
Subject:
Escherichia Coli
Subject:
Medicine and Health Sciences
Subject:
Pathology and Laboratory Medicine
Subject:
Pathogens
Subject:
Microbial Pathogens
Subject:
Bacterial Pathogens
Subject:
Escherichia Coli
Subject:
Biology and Life Sciences
Subject:
Organisms
Subject:
Bacteria
Subject:
Enterobacteriaceae
Subject:
Escherichia
Subject:
Escherichia Coli
Subject:
Biology and Life Sciences
Subject:
Organisms
Subject:
Bacteria
Subject:
Gut Bacteria
Subject:
Escherichia
Subject:
Escherichia Coli
Subject:
Research and Analysis Methods
Subject:
Experimental Organism Systems
Subject:
Prokaryotic Models
Subject:
Escherichia Coli
Subject:
Research and Analysis Methods
Subject:
Bioassays and Physiological Analysis
Subject:
Microarrays
Subject:
Biology and Life Sciences
Subject:
Microbiology
Subject:
Bacteriology
Subject:
Bacterial Physiology
Subject:
Adhesins
Subject:
Biology and Life Sciences
Subject:
Microbiology
Subject:
Microbial Physiology
Subject:
Bacterial Physiology
Subject:
Adhesins
Subject:
Medicine and Health Sciences
Subject:
Pathology and Laboratory Medicine
Subject:
Pathogens
Subject:
Virulence Factors
Subject:
Adhesins
Subject:
Biology and Life Sciences
Subject:
Evolutionary Biology
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Phylogenetic Analysis
Subject:
Biology and Life Sciences
Subject:
Taxonomy
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Phylogenetic Analysis
Subject:
Computer and Information Sciences
Subject:
Data Management
Subject:
Taxonomy
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Phylogenetic Analysis
Subject:
Biology and Life Sciences
Subject:
Microbiology
Subject:
Medical Microbiology
Subject:
Microbial Pathogens
Subject:
Bacterial Pathogens
Subject:
Medicine and Health Sciences
Subject:
Pathology and Laboratory Medicine
Subject:
Pathogens
Subject:
Microbial Pathogens
Subject:
Bacterial Pathogens
Subject:
Biology and Life Sciences
Subject:
Toxicology
Subject:
Toxic Agents
Subject:
Toxins
Subject:
Medicine and Health Sciences
Subject:
Pathology and Laboratory Medicine
Subject:
Toxicology
Subject:
Toxic Agents
Subject:
Toxins
