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      A fungal symbiont converts provisioned cellulose into edible yield for its leafcutter ant farmers

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      1 , , 1 , 2 , 1 , 1 , 3
      Biology Letters
      The Royal Society
      Atta, Leucoagaricus, gongylidia, herbivory, nutrition, stable isotope

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          Abstract

          While ants are dominant consumers in terrestrial habitats, only the leafcutters practice herbivory. Leafcutters do this by provisioning a fungal cultivar ( Leucoagaricus gongylophorus) with freshly cut plant fragments and harnessing its metabolic machinery to convert plant mulch into edible fungal tissue (hyphae and swollen hyphal cells called gongylidia). The cultivar is known to degrade cellulose, but whether it assimilates this ubiquitous but recalcitrant molecule into its nutritional reward structures is unknown. We use in vitro experiments with isotopically labelled cellulose to show that fungal cultures from an Atta colombica leafcutter colony convert cellulose-derived carbon into gongylidia, even when potential bacterial symbionts are excluded. A laboratory feeding experiment showed that cellulose assimilation also occurs in vivo in A. colombica colonies. Analyses of publicly available transcriptomic data further identified a complete, constitutively expressed, cellulose-degradation pathway in the fungal cultivar. Confirming leafcutters use cellulose as a food source sheds light on the eco-evolutionary success of these important herbivores.

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          EMBOSS: The European Molecular Biology Open Software Suite

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            Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material.

            Procedures utilizing Chelex 100 chelating resin have been developed for extracting DNA from forensic-type samples for use with the PCR. The procedures are simple, rapid, involve no organic solvents and do not require multiple tube transfers for most types of samples. The extraction of DNA from semen and very small bloodstains using Chelex 100 is as efficient or more efficient than using proteinase K and phenol-chloroform extraction. DNA extracted from bloodstains seems less prone to contain PCR inhibitors when prepared by this method. The Chelex method has been used with amplification and typing at the HLA DQ alpha locus to obtain the DQ alpha genotypes of many different types of samples, including whole blood, bloodstains, seminal stains, buccal swabs, hair and post-coital samples. The results of a concordance study are presented in which the DQ alpha genotypes of 84 samples prepared using Chelex or using conventional phenol-chloroform extraction are compared. The genotypes obtained using the two different extraction methods were identical for all samples tested.
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              BRENDA, the ELIXIR core data resource in 2021: new developments and updates

              Abstract The BRENDA enzyme database (https://www.brenda-enzymes.org), established in 1987, has evolved into the main collection of functional enzyme and metabolism data. In 2018, BRENDA was selected as an ELIXIR Core Data Resource. BRENDA provides reliable data, continuous curation and updates of classified enzymes, and the integration of newly discovered enzymes. The main part contains >5 million data for ∼90 000 enzymes from ∼13 000 organisms, manually extracted from ∼157 000 primary literature references, combined with information of text and data mining, data integration, and prediction algorithms. Supplements comprise disease-related data, protein sequences, 3D structures, genome annotations, ligand information, taxonomic, bibliographic, and kinetic data. BRENDA offers an easy access to enzyme information from quick to advanced searches, text- and structured-based queries for enzyme-ligand interactions, word maps, and visualization of enzyme data. The BRENDA Pathway Maps are completely revised and updated for an enhanced interactive and intuitive usability. The new design of the Enzyme Summary Page provides an improved access to each individual enzyme. A new protein structure 3D viewer was integrated. The prediction of the intracellular localization of eukaryotic enzymes has been implemented. The new EnzymeDetector combines BRENDA enzyme annotations with protein and genome databases for the detection of eukaryotic and prokaryotic enzymes.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: SupervisionRole: ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: MethodologyRole: Writing – review & editing
                Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: MethodologyRole: Writing – review & editing
                Role: ConceptualizationRole: InvestigationRole: MethodologyRole: SupervisionRole: Writing – review & editing
                Role: ConceptualizationRole: Funding acquisitionRole: MethodologyRole: Project administrationRole: SupervisionRole: VisualizationRole: Writing – review & editing
                Journal
                Biol Lett
                Biol Lett
                RSBL
                roybiolett
                Biology Letters
                The Royal Society
                1744-9561
                1744-957X
                April 20, 2022
                April 2022
                April 20, 2022
                : 18
                : 4
                : 20220022
                Affiliations
                [ 1 ] Section for Ecology and Evolution, Department of Biology, University of Copenhagen, , Universitetsparken 15, 2100 Copenhagen East, Denmark
                [ 2 ] Section for Terrestrial Ecology, Department of Biology, University of Copenhagen, , Copenhagen, Denmark
                [ 3 ] Smithsonian Tropical Research Institute, , Apartado Postal 0843-03092, Balboa, Ancon, Panama
                Author notes

                Electronic supplementary material is available online at https://doi.org/10.6084/m9.figshare.c.5923794.

                Author information
                http://orcid.org/0000-0003-1663-4908
                https://orcid.org/0000-0002-9541-8658
                https://orcid.org/0000-0003-2214-2993
                https://orcid.org/0000-0003-3309-7737
                Article
                rsbl20220022
                10.1098/rsbl.2022.0022
                9019514
                35440234
                2a902356-8e7d-4028-b6d1-535e5b9ce9f6
                © 2022 The Authors.

                Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.

                History
                : January 14, 2022
                : March 25, 2022
                Funding
                Funded by: European Research Council;
                Award ID: ERC-2017-STG-757810
                Award ID: SE/A-24-19
                Award ID: SEX/A-41-19
                Categories
                1001
                60
                Physiology
                Research Articles

                Life sciences
                atta,leucoagaricus,gongylidia,herbivory,nutrition,stable isotope
                Life sciences
                atta, leucoagaricus, gongylidia, herbivory, nutrition, stable isotope

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