9
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Soil-atmosphere fluxes of CO 2, CH 4, and N 2O across an experimentally-grown, successional gradient of biocrust community types

      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Biological soil crusts (biocrusts) are critical components of dryland and other ecosystems worldwide, and are increasingly recognized as novel model ecosystems from which more general principles of ecology can be elucidated. Biocrusts are often diverse communities, comprised of both eukaryotic and prokaryotic organisms with a range of metabolic lifestyles that enable the fixation of atmospheric carbon and nitrogen. However, how the function of these biocrust communities varies with succession is incompletely characterized, especially in comparison to more familiar terrestrial ecosystem types such as forests. We conducted a greenhouse experiment to investigate how community composition and soil-atmosphere trace gas fluxes of CO 2, CH 4, and N 2O varied from early-successional light cyanobacterial biocrusts to mid-successional dark cyanobacteria biocrusts and late-successional moss-lichen biocrusts and as biocrusts of each successional stage matured. Cover type richness increased as biocrusts developed, and richness was generally highest in the late-successional moss-lichen biocrusts. Microbial community composition varied in relation to successional stage, but microbial diversity did not differ significantly among stages. Net photosynthetic uptake of CO 2 by each biocrust type also increased as biocrusts developed but tended to be moderately greater (by up to ≈25%) for the mid-successional dark cyanobacteria biocrusts than the light cyanobacterial biocrusts or the moss-lichen biocrusts. Rates of soil C accumulation were highest for the dark cyanobacteria biocrusts and light cyanobacteria biocrusts, and lowest for the moss-lichen biocrusts and bare soil controls. Biocrust CH 4 and N 2O fluxes were not consistently distinguishable from the same fluxes measured from bare soil controls; the measured rates were also substantially lower than have been reported in previous biocrust studies. Our experiment, which uniquely used greenhouse-grown biocrusts to manipulate community composition and accelerate biocrust development, shows how biocrust function varies along a dynamic gradient of biocrust successional stages.

          Related collections

          Most cited references58

          • Record: found
          • Abstract: found
          • Article: not found

          DADA2: High resolution sample inference from Illumina amplicon data

          We present DADA2, a software package that models and corrects Illumina-sequenced amplicon errors. DADA2 infers sample sequences exactly, without coarse-graining into OTUs, and resolves differences of as little as one nucleotide. In several mock communities DADA2 identified more real variants and output fewer spurious sequences than other methods. We applied DADA2 to vaginal samples from a cohort of pregnant women, revealing a diversity of previously undetected Lactobacillus crispatus variants.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: found
            Is Open Access

            The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

            SILVA (from Latin silva, forest, http://www.arb-silva.de) is a comprehensive web resource for up to date, quality-controlled databases of aligned ribosomal RNA (rRNA) gene sequences from the Bacteria, Archaea and Eukaryota domains and supplementary online services. The referred database release 111 (July 2012) contains 3 194 778 small subunit and 288 717 large subunit rRNA gene sequences. Since the initial description of the project, substantial new features have been introduced, including advanced quality control procedures, an improved rRNA gene aligner, online tools for probe and primer evaluation and optimized browsing, searching and downloading on the website. Furthermore, the extensively curated SILVA taxonomy and the new non-redundant SILVA datasets provide an ideal reference for high-throughput classification of data from next-generation sequencing approaches.
              Bookmark
              • Record: found
              • Abstract: not found
              • Article: not found

              Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

                Bookmark

                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                26 September 2022
                2022
                : 13
                : 979825
                Affiliations
                [1] 1Center for Ecosystem Science and Society, Northern Arizona University , Flagstaff, AZ, United States
                [2] 2School of Informatics, Computing, and Cyber Systems, Northern Arizona University , Flagstaff, AZ, United States
                [3] 3Department of Astronomy and Planetary Science, Northern Arizona University , Flagstaff, AZ, United States
                [4] 4University of California , Santa Barbara, CA, United States
                [5] 5Department of Astronomy and Astrophysics, The Pennsylvania State University , State College, PA, United States
                [6] 6School of Forestry, Northern Arizona University , Flagstaff, AZ, United States
                [7] 7Department of Environmental Sciences–Botany, University of Basel , Basel, Switzerland
                [8] 8Swiss Federal Institute for Forest, Snow and Landscape Research WSL , Birmensdorf, Switzerland
                [9] 9Lowell Observatory , Flagstaff, AZ, United States
                Author notes

                Edited by: Andrew David Thomas, Aberystwyth University, United Kingdom

                Reviewed by: Roey Angel, Academy of Sciences of the Czech Republic (ASCR), Czechia; Charles K. Lee, University of Waikato, New Zealand

                *Correspondence: Andrew D. Richardson, andrew.richardson@ 123456nau.edu

                This article was submitted to Terrestrial Microbiology, a section of the journal Frontiers in Microbiology

                Article
                10.3389/fmicb.2022.979825
                9549369
                2a3f4545-956b-44a2-948d-b7a7cd3f817c
                Copyright © 2022 Richardson, Kong, Taylor, Le Moine, Bowker, Barber, Basler, Carbone, Hayer, Koch, Salvatore, Sonnemaker and Trilling.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 28 June 2022
                : 07 September 2022
                Page count
                Figures: 7, Tables: 1, Equations: 0, References: 59, Pages: 19, Words: 12977
                Funding
                Funded by: National Science Foundation, doi 10.13039/100000001;
                Award ID: 1852478
                Award ID: 1950901
                Categories
                Microbiology
                Original Research

                Microbiology & Virology
                biological soil crusts,cryptobiotic crusts,cyanobacteria,greenhouse gas fluxes,nitrification,methane,photosynthesis,succession

                Comments

                Comment on this article