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      An aberrant phase transition of stress granules triggered by misfolded protein and prevented by chaperone function

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          Abstract

          Stress granules (SG) are membrane‐less compartments involved in regulating mRNAs during stress. Aberrant forms of SGs have been implicated in age‐related diseases, such as amyotrophic lateral sclerosis (ALS), but the molecular events triggering their formation are still unknown. Here, we find that misfolded proteins, such as ALS‐linked variants of SOD1, specifically accumulate and aggregate within SGs in human cells. This decreases the dynamics of SGs, changes SG composition, and triggers an aberrant liquid‐to‐solid transition of in vitro reconstituted compartments. We show that chaperone recruitment prevents the formation of aberrant SGs and promotes SG disassembly when the stress subsides. Moreover, we identify a backup system for SG clearance, which involves transport of aberrant SGs to the aggresome and their degradation by autophagy. Thus, cells employ a system of SG quality control to prevent accumulation of misfolded proteins and maintain the dynamic state of SGs, which may have relevance for ALS and related diseases.

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          Most cited references40

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          Aggresomes: A Cellular Response to Misfolded Proteins

          Intracellular deposition of misfolded protein aggregates into ubiquitin-rich cytoplasmic inclusions is linked to the pathogenesis of many diseases. Why these aggregates form despite the existence of cellular machinery to recognize and degrade misfolded protein and how they are delivered to cytoplasmic inclusions are not known. We have investigated the intracellular fate of cystic fibrosis transmembrane conductance regulator (CFTR), an inefficiently folded integral membrane protein which is degraded by the cytoplasmic ubiquitin-proteasome pathway. Overexpression or inhibition of proteasome activity in transfected human embryonic kidney or Chinese hamster ovary cells led to the accumulation of stable, high molecular weight, detergent-insoluble, multiubiquitinated forms of CFTR. Using immunofluorescence and transmission electron microscopy with immunogold labeling, we demonstrate that undegraded CFTR molecules accumulate at a distinct pericentriolar structure which we have termed the aggresome. Aggresome formation is accompanied by redistribution of the intermediate filament protein vimentin to form a cage surrounding a pericentriolar core of aggregated, ubiquitinated protein. Disruption of microtubules blocks the formation of aggresomes. Similarly, inhibition of proteasome function also prevented the degradation of unassembled presenilin-1 molecules leading to their aggregation and deposition in aggresomes. These data lead us to propose that aggresome formation is a general response of cells which occurs when the capacity of the proteasome is exceeded by the production of aggregation-prone misfolded proteins.
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            Stress granules: the Tao of RNA triage.

            Cytoplasmic RNA structures such as stress granules (SGs) and processing bodies (PBs) are functional byproducts of mRNA metabolism, sharing substrate mRNA, dynamic properties and many proteins, but also housing separate components and performing independent functions. Each can exist independently, but when coordinately induced they are often tethered together in a cytosolic dance. Although both self-assemble in response to stress-induced perturbations in translation, several recent reports reveal novel proteins and RNAs that are components of these structures but also perform other cellular functions. Proteins that mediate splicing, transcription, adhesion, signaling and development are all integrated with SG and PB assembly. Thus, these ephemeral bodies represent more than just the dynamic sorting of mRNA between translation and decay.
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              Cell-free formation of RNA granules: bound RNAs identify features and components of cellular assemblies.

              Cellular granules lacking boundary membranes harbor RNAs and their associated proteins and play diverse roles controlling the timing and location of protein synthesis. Formation of such granules was emulated by treatment of mouse brain extracts and human cell lysates with a biotinylated isoxazole (b-isox) chemical. Deep sequencing of the associated RNAs revealed an enrichment for mRNAs known to be recruited to neuronal granules used for dendritic transport and localized translation at synapses. Precipitated mRNAs contain extended 3' UTR sequences and an enrichment in binding sites for known granule-associated proteins. Hydrogels composed of the low complexity (LC) sequence domain of FUS recruited and retained the same mRNAs as were selectively precipitated by the b-isox chemical. Phosphorylation of the LC domain of FUS prevented hydrogel retention, offering a conceptual means of dynamic, signal-dependent control of RNA granule assembly. Copyright © 2012 Elsevier Inc. All rights reserved.
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                Author and article information

                Contributors
                alberti@mpi-cbg.de
                Journal
                EMBO J
                EMBO J
                10.1002/(ISSN)1460-2075
                EMBJ
                embojnl
                The EMBO Journal
                John Wiley and Sons Inc. (Hoboken )
                0261-4189
                1460-2075
                04 April 2017
                14 June 2017
                04 April 2017
                : 36
                : 12 ( doiID: 10.1002/embj.v36.12 )
                : 1669-1687
                Affiliations
                [ 1 ]Max Planck Institute of Molecular Cell Biology and Genetics DresdenGermany
                [ 2 ] Department of Biomedical, Metabolic and Neural SciencesUniversity of Modena and Reggio Emilia ModenaItaly
                Author notes
                [*] [* ]Corresponding author. Tel: +49 351 210 2663; E‐mail: alberti@ 123456mpi-cbg.de
                Author information
                http://orcid.org/0000-0003-4017-6505
                Article
                EMBJ201695957
                10.15252/embj.201695957
                5470046
                28377462
                29dc5908-1c1e-473c-8bb2-cd3a605c8535
                © 2017 The Authors. Published under the terms of the CC BY 4.0 license

                This is an open access article under the terms of the Creative Commons Attribution 4.0 License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 25 October 2016
                : 13 February 2017
                : 07 March 2017
                Page count
                Figures: 12, Tables: 0, Pages: 19, Words: 13990
                Funding
                Funded by: Max Planck Society
                Funded by: Alexander von Humboldt Foundation
                Award ID: GRO/1156614 STP‐2
                Funded by: German Federal Ministry of Research and Education
                Award ID: BMBF 031A359A
                Funded by: DFG
                Funded by: Joint Programme—Neurodegenerative Disease Research (JPND)
                Funded by: European Union's Horizon 2020
                Award ID: 643417
                Categories
                Article
                Articles
                Custom metadata
                2.0
                embj201695957
                14 June 2017
                Converter:WILEY_ML3GV2_TO_NLMPMC version:5.1.1 mode:remove_FC converted:14.06.2017

                Molecular biology
                protein aggregation,protein misfolding,proteostasis,sod1,stress granules,membrane & intracellular transport,protein biosynthesis & quality control,rna biology

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