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      Ascaridoid parasites in European sardine throughout the annual cycle: Variability in parasitic load according to host stock features

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          Abstract

          In recent years, a drop in the condition of the European sardine has been observed. Although several causes have been attributed to this issue, as overfishing and climate change, little is known about the link between ascaridoid nematode parasitisation and fish status. In this study, sardines were obtained from four fishing grounds along the Mediterranean (Alboran, Northern Spain, Northern Adriatic, and Aegean), and one location in the Atlantic Ocean (Southern Portugal). After analysing individual fish body condition (by direct tissue fat content measurements and condition indices), and reproductive status (by a detailed gonadal examination) throughout the entire annual cycle, ascaridoids were recognised by combining naked eye and UV-press method along flesh, viscera, and gonads. Afterwards, sequence analysis of the rDNA internal transcribed spacers region (ITS) and the mtDNA cox2 gene were used to identify and characterise the different species of ascaridoids from the fish host in the localities throughout the seasons. The main species found along different areas was Hysterothylacium aduncum, present in the Northern Adriatic (prevalence of 7.6%, mean intensity 1.700), the Atlantic (7.5%, 3.889), and the Northern Spain (3.9%, 1.600). Moreover, few individuals of Anisakis simplex (s.s.) and A. pegreffii were observed in the Atlantic (1.7% and 0.8%, respectively), and the latter species was also found in the Adriatic stock (0.8%). All ascaridoid specimens were found in viscera. Obtained results seem to indicate that in stocks with medium sizes, small variations in length are related to parasite intensity. This study highlights the importance of seasonal parasitological analyses at stock level and, especially, in capital breeders, as relationships between condition and reproduction parameters and parasitism are conditioned by seasonality.

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          Highlights

          • The main ascaridoid species found in sardine stocks was Hysterothylacium aduncum.

          • Species of the genus Anisakis were observed in the Atlantic and the Adriatic.

          • Negative link nematode load-host condition but potentially affected by seasonality.

          • Non-parasitised stocks (Alboran and Aegean) had different reproductive phenology.

          • Small length variations in medium-size sardines were related with their nematode load.

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          MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

          The Molecular Evolutionary Genetics Analysis (Mega) software implements many analytical methods and tools for phylogenomics and phylomedicine. Here, we report a transformation of Mega to enable cross-platform use on Microsoft Windows and Linux operating systems. Mega X does not require virtualization or emulation software and provides a uniform user experience across platforms. Mega X has additionally been upgraded to use multiple computing cores for many molecular evolutionary analyses. Mega X is available in two interfaces (graphical and command line) and can be downloaded from www.megasoftware.net free of charge.
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            Biostatistical Analysis

            Presents a broad collection of data analysis techniques suitable for biological investigations, either as an introductory textbook assuming no prior knowledge of statistics, or as a reference on concepts and procedures of statistical analysis for professional use in the biological disciplines. Each
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              Database indexing for production MegaBLAST searches

              Motivation: The BLAST software package for sequence comparison speeds up homology search by preprocessing a query sequence into a lookup table. Numerous research studies have suggested that preprocessing the database instead would give better performance. However, production usage of sequence comparison methods that preprocess the database has been limited to programs such as BLAT and SSAHA that are designed to find matches when query and database subsequences are highly similar. Results: We developed a new version of the MegaBLAST module of BLAST that does the initial phase of finding short seeds for matches by searching a database index. We also developed a program makembindex that preprocesses the database into a data structure for rapid seed searching. We show that the new ‘indexed MegaBLAST’ is faster than the ‘non-indexed’ version for most practical uses. We show that indexed MegaBLAST is faster than miBLAST, another implementation of BLAST nucleotide searching with a preprocessed database, for most of the 200 queries we tested. To deploy indexed MegaBLAST as part of NCBI'sWeb BLAST service, the storage of databases and the queueing mechanism were modified, so that some machines are now dedicated to serving queries for a specific database. The response time for such Web queries is now faster than it was when each computer handled queries for multiple databases. Availability: The code for indexed MegaBLAST is part of the blastn program in the NCBI C++ toolkit. The preprocessor program makembindex is also in the toolkit. Indexed MegaBLAST has been used in production on NCBI's Web BLAST service to search one version of the human and mouse genomes since October 2007. The Linux command-line executables for blastn and makembindex, documentation, and some query sets used to carry out the tests described below are available in the directory: ftp://ftp.ncbi.nlm.nih.gov/pub/agarwala/indexed_megablast Contact: schaffer@helix.nih.gov Supplementary information: Supplementary data are available at Bioinformatics online.
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                Author and article information

                Contributors
                Journal
                Int J Parasitol Parasites Wildl
                Int J Parasitol Parasites Wildl
                International Journal for Parasitology: Parasites and Wildlife
                Elsevier
                2213-2244
                06 December 2022
                April 2023
                06 December 2022
                : 20
                : 1-11
                Affiliations
                [a ]Institute of Aquatic Ecology (IEA), Department of Environmental Sciences. Universitat de Girona (UdG), Campus Montilivi, 17003, Girona, Spain
                [b ]Department of Ecological and Biological Sciences (DEB). Tuscia University, 01100, Viterbo, Italy
                [c ]Department of Public Health and Infectious Diseases, Section of Parasitology. ‘Sapienza-University of Rome’, P.le Aldo Moro, 5, 00185, Rome, Italy
                [d ]Genetic Ichthyology Laboratory (LIG), Department of Biology. Universitat de Girona (UdG), Campus Montilivi, 17003, Girona, Spain
                Author notes
                []Corresponding author. jordi.vinas@ 123456udg.edu
                Article
                S2213-2244(22)00106-7
                10.1016/j.ijppaw.2022.12.001
                9791428
                36578301
                29b96d35-2f41-4194-be72-7b3b6533200f
                © 2022 The Authors

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 28 October 2022
                : 1 December 2022
                : 2 December 2022
                Categories
                Article

                anisakis,capital breeder,condition,hysterothylacium aduncum,pelagic,sardina pilchardus

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