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      A molecular phylogeny of the genus Drimia (Asparagaceae: Scilloideae: Urgineeae) in India inferred from non-coding chloroplast and nuclear ribosomal DNA sequences

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      Scientific Reports
      Nature Publishing Group UK
      Plant genetics, Plant molecular biology

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          Abstract

          The evolutionary history of the medicinally important bulbous geophyte Drimia (subfamily: Scilloideae) has long been considered as a matter of debate in the monocot systematics. In India the genus is represented by a species complex, however, the taxonomic delimitation among them is ill-defined till date. In the present study, a comprehensive phylogenetic relationship among Indian species of this genus has been inferred for the first time based on chloroplast DNA trnL intron, rps16-trnK intergenic spacer, atpB-rbcL intergenic spacer and ribosomal DNA ITS1-5.8S-ITS2 sequences, leaf morphology, anatomy, stomatal characteristics and pollen exine ornamentations. The present findings revealed the monophyletic origin of the Indian members of Drimia and grouped them into two possible lineages (clade- I and II). The phylogenetic tree based on cpDNA concatenated sequences further resolved the clade-I into two distinct subclades (I and II) and clarified the intraspecies relationship among the studied members. The present study suggested a strong relationship between the molecular phylogeny and the morphological characteristics of the species studied. A possible trend of evolution of two important traits: ‘type of palisade cells’ in leaf and ‘pollen exine patterns’ among the members of Drimia in India was also suggested.

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          Universal primers for amplification of three non-coding regions of chloroplast DNA.

          Six primers for the amplification of three non-coding regions of chloroplast DNA via the polymerase chain reaction (PCR) have been designed. In order to find out whether these primers were universal, we used them in an attempt to amplify DNA from various plant species. The primers worked for most species tested including algae, bryophytes, pteridophytes, gymnosperms and angiosperms. The fact that they amplify chloroplast DNA non-coding regions over a wide taxonomic range means that these primers may be used to study the population biology (in supplying markers) and evolution (inter- and probably intraspecific phylogenies) of plants.
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              TESTING SIGNIFICANCE OF INCONGRUENCE

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                Author and article information

                Contributors
                sumitajha.cu@gmail.com
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                17 May 2019
                17 May 2019
                2019
                : 9
                : 7563
                Affiliations
                ISNI 0000 0001 0664 9773, GRID grid.59056.3f, Center of Advanced study, Department of Botany, , University of Calcutta, ; 35, Ballygunge Circular Road, Kolkata, 700 019 West Bengal India
                Author information
                http://orcid.org/0000-0002-0157-3578
                http://orcid.org/0000-0002-1375-2768
                Article
                43968
                10.1038/s41598-019-43968-z
                6525161
                31101828
                27826e5f-af48-4623-a047-0edd57356f14
                © The Author(s) 2019

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 28 November 2018
                : 1 May 2019
                Funding
                Funded by: National Academy of Sciences India (NASI) Grant Reference Number:NAS/612/1/2017-18 Dated: 16/01/2018
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                © The Author(s) 2019

                Uncategorized
                plant genetics,plant molecular biology
                Uncategorized
                plant genetics, plant molecular biology

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