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      A localized adaptor protein performs distinct functions at the Caulobacter cell poles

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          Significance

          Asymmetric cell division yields two distinct daughter cells by mechanisms that underlie stem cell behavior and cellular diversity in all organisms. The bacterium Caulobacter crescentus is able to orchestrate this complex process with less than 4,000 genes. This article describes a strategy deployed by Caulobacter where a regulatory protein, PopA, is programed to perform distinct roles based on its subcellular address. We demonstrate that, depending on the availability of a second messenger molecule, PopA adopts either a monomer or dimer form. The two oligomeric forms interact with different partners at the two cell poles, playing a critical role in the degradation of a master transcription factor at one pole and flagellar assembly at the other pole.

          Abstract

          Asymmetric cell division generates two daughter cells with distinct characteristics and fates. Positioning different regulatory and signaling proteins at the opposing ends of the predivisional cell produces molecularly distinct daughter cells. Here, we report a strategy deployed by the asymmetrically dividing bacterium Caulobacter crescentus where a regulatory protein is programmed to perform distinct functions at the opposing cell poles. We find that the CtrA proteolysis adaptor protein PopA assumes distinct oligomeric states at the two cell poles through asymmetrically distributed c-di-GMP: dimeric at the stalked pole and monomeric at the swarmer pole. Different polar organizing proteins at each cell pole recruit PopA where it interacts with and mediates the function of two molecular machines: the ClpXP degradation machinery at the stalked pole and the flagellar basal body at the swarmer pole. We discovered a binding partner of PopA at the swarmer cell pole that together with PopA regulates the length of the flagella filament. Our work demonstrates how a second messenger provides spatiotemporal cues to change the physical behavior of an effector protein, thereby facilitating asymmetry.

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          Most cited references79

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          Über die von der molekularkinetischen Theorie der Wärme geforderte Bewegung von in ruhenden Flüssigkeiten suspendierten Teilchen

          A Einstein (1905)
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            Regulation of cadherin-mediated adhesion in morphogenesis.

            Cadherin cell-adhesion proteins mediate many facets of tissue morphogenesis. The dynamic regulation of cadherins in response to various extracellular signals controls cell sorting, cell rearrangements and cell movements. Cadherins are regulated at the cell surface by an inside-out signalling mechanism that is analogous to the integrins in platelets and leukocytes. Signal-transduction pathways impinge on the catenins (cytoplasmic cadherin-associated proteins), which transduce changes across the membrane to alter the state of the cadherin adhesive bond.
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              ThunderSTORM: a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging

              Summary: ThunderSTORM is an open-source, interactive and modular plug-in for ImageJ designed for automated processing, analysis and visualization of data acquired by single-molecule localization microscopy methods such as photo-activated localization microscopy and stochastic optical reconstruction microscopy. ThunderSTORM offers an extensive collection of processing and post-processing methods so that users can easily adapt the process of analysis to their data. ThunderSTORM also offers a set of tools for creation of simulated data and quantitative performance evaluation of localization algorithms using Monte Carlo simulations. Availability and implementation: ThunderSTORM and the online documentation are both freely accessible at https://code.google.com/p/thunder-storm/ Contact: guy.hagen@lf1.cuni.cz Supplementary information: Supplementary data are available at Bioinformatics online.
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                Author and article information

                Journal
                Proc Natl Acad Sci U S A
                Proc Natl Acad Sci U S A
                pnas
                pnas
                PNAS
                Proceedings of the National Academy of Sciences of the United States of America
                National Academy of Sciences
                0027-8424
                1091-6490
                30 March 2021
                22 March 2021
                22 March 2021
                : 118
                : 13
                : e2024705118
                Affiliations
                [1] aDepartment of Chemistry, Stanford University , Stanford, CA 94305;
                [2] bDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305;
                [3] cChan Zuckerberg Biohub , San Francisco, CA 94158
                Author notes
                1To whom correspondence may be addressed. Email: wmoerner@ 123456stanford.edu or shapiro@ 123456stanford.edu .

                Contributed by Lucy Shapiro, February 8, 2021 (sent for review November 30, 2020; reviewed by Johan Elf and Arash Komeili)

                Author contributions: J.W., W.E.M., and L.S. designed research; J.W., W.E.M., and L.S. performed research; W.E.M. and L.S. contributed new reagents/analytic tools; J.W., W.E.M., and L.S. analyzed data; and J.W., W.E.M., and L.S. wrote the paper.

                Reviewers: J.E., Uppsala University; and A.K., University of California, Berkeley.

                Author information
                https://orcid.org/0000-0002-0078-2191
                https://orcid.org/0000-0002-2830-209X
                Article
                202024705
                10.1073/pnas.2024705118
                8020655
                33753507
                24793a5c-4863-4038-ac1d-0032376e6cfc
                Copyright © 2021 the Author(s). Published by PNAS.

                This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND).

                History
                Page count
                Pages: 10
                Funding
                Funded by: HHS | NIH | National Institute of General Medical Sciences (NIGMS) 100000057
                Award ID: R35GM118067
                Award Recipient : Jiarui Wang Award Recipient : W. E. Moerner Award Recipient : Lucy Shapiro
                Funded by: HHS | NIH | National Institute of General Medical Sciences (NIGMS) 100000057
                Award ID: R35GM118071
                Award Recipient : Jiarui Wang Award Recipient : W. E. Moerner Award Recipient : Lucy Shapiro
                Funded by: SU | Stanford Bio-X 100011098
                Award ID: NA
                Award Recipient : Jiarui Wang
                Categories
                423
                408
                Biological Sciences
                Microbiology
                Physical Sciences
                Biophysics and Computational Biology

                asymmetry,single-particle tracking,second messenger,flagellar assembly,protein degradation

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