Contributors
Lusine Nazaryan-Petersen: Role: Formal analysisRole: InvestigationRole: SupervisionRole: ValidationRole: VisualizationRole:
Writing – original draftRole: Writing – review & editing
Jesper Eisfeldt:
ORCID: http://orcid.org/0000-0003-3716-4917
Role: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole:
SoftwareRole: VisualizationRole: Writing – original draftRole: Writing – review &
editing
Maria Pettersson:
ORCID: http://orcid.org/0000-0003-3120-1625
Role: Formal analysisRole: InvestigationRole: ValidationRole: Writing – original draftRole:
Writing – review & editing
Johanna Lundin: Role: Formal analysisRole: InvestigationRole: VisualizationRole: Writing – review
& editing
Daniel Nilsson:
ORCID: http://orcid.org/0000-0001-5831-385X
Role: Data curationRole: Formal analysisRole: MethodologyRole: SoftwareRole: Writing
– review & editing
Josephine Wincent: Role: Formal analysisRole: Writing – review & editing
Agne Lieden: Role: Formal analysisRole: Writing – review & editing
Lovisa Lovmar: Role: Formal analysisRole: InvestigationRole: ResourcesRole: Writing – review & editing
Jesper Ottosson: Role: Formal analysisRole: InvestigationRole: ResourcesRole: Writing – review & editing
Jelena Gacic:
ORCID: http://orcid.org/0000-0002-1431-7792
Role: Formal analysisRole: InvestigationRole: ResourcesRole: Writing – review & editing
Outi Mäkitie:
ORCID: http://orcid.org/0000-0002-4547-001X
Role: Formal analysisRole: InvestigationRole: ResourcesRole: Writing – review & editing
Ann Nordgren: Role: Formal analysisRole: ResourcesRole: Writing – review & editing
Francesco Vezzi: Role: MethodologyRole: SoftwareRole: Writing – review & editing
Valtteri Wirta:
ORCID: http://orcid.org/0000-0003-3811-5439
Role: Data curationRole: MethodologyRole: Writing – review & editing
Max Käller:
ORCID: http://orcid.org/0000-0001-6813-3051
Role: Data curationRole: MethodologyRole: Writing – review & editing
Tina Duelund Hjortshøj: Role: Formal analysisRole: InvestigationRole: ResourcesRole: Writing – review & editing
Cathrine Jespersgaard: Role: Formal analysisRole: InvestigationRole: Writing – review & editing
Rayan Houssari: Role: ValidationRole: Writing – review & editing
Laura Pignata: Role: ValidationRole: Writing – review & editing
Mads Bak: Role: Formal analysisRole: InvestigationRole: MethodologyRole: SoftwareRole: Writing
– review & editing
Niels Tommerup:
ORCID: http://orcid.org/0000-0003-2304-0112
Role: Data curationRole: Formal analysisRole: Funding acquisitionRole: InvestigationRole:
MethodologyRole: ResourcesRole: Writing – review & editing
Elisabeth Syk Lundberg:
ORCID: http://orcid.org/0000-0001-5692-725X
Role: Formal analysisRole: InvestigationRole: Writing – review & editing
Zeynep Tümer: Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole:
ResourcesRole: SupervisionRole: Writing – original draftRole: Writing – review & editing
Anna Lindstrand:
ORCID: http://orcid.org/0000-0003-0806-5602
Role: ConceptualizationRole: Data curationRole: Formal analysisRole: Funding acquisitionRole:
InvestigationRole: Project administrationRole: ResourcesRole: SupervisionRole: Writing
– original draftRole: Writing – review & editing
Nancy B. Spinner: Role: Editor
Journal
Journal ID (nlm-ta): PLoS Genet
Journal ID (iso-abbrev): PLoS Genet
Journal ID (publisher-id): plos
Journal ID (pmc): plosgen
Title:
PLoS Genetics
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Print):
1553-7390
ISSN
(Electronic):
1553-7404
Publication date
(Electronic):
12
November
2018
Publication date Collection:
November
2018
Volume: 14
Issue: 11
Electronic Location Identifier: e1007780
Affiliations
[1
]
Wilhelm Johannsen Center for Functional Genome Research, Institute of Cellular and
Molecular Medicine, University of Copenhagen, Copenhagen, Denmark
[2
]
Department of Molecular Medicine and Surgery, Center for Molecular Medicine, Karolinska
Institute, Stockholm, Sweden
[3
]
Science for Life Laboratory, Karolinska Institutet Science Park, Solna, Sweden
[4
]
Department of Clinical Genetics, Karolinska University Hospital, Stockholm, Sweden
[5
]
Department of Clinical Genetics, Sahlgrenska University Hospital, Gothenburg, Sweden
[6
]
Department of Clinical Genetics, Linköping University Hospital, Linköping, Sweden
[7
]
Children’s Hospital, University of Helsinki and Helsinki University Hospital, Helsinki,
Finland
[8
]
Folkhälsan Institute of Genetics, Helsinki, Finland
[9
]
SciLifeLab, Department of Biochemistry and Biophysics, Stockholm University, Stockholm,
Sweden
[10
]
SciLifeLab, School of Engineering Sciences in Chemistry, Biotechnology and Health,
KTH Royal Institute of Technology, Stockholm, Sweden
[11
]
SciLifeLab, Department of Microbiology, Tumor and Cell biology, Karolinska Institutet,
Stockholm, Sweden
[12
]
Kennedy Center, Department of Clinical Genetics, Copenhagen University Hospital, Rigshospitalet,
Glostrup, Denmark
[13
]
Department of Clinical Medicine, Faculty of Health and Medical Sciences, University
of Copenhagen, Denmark
University of Pennsylvania, UNITED STATES
Author notes
The authors have declared that no competing interests exist.
[¤]
Current address: Devyser AB, Instrumentvägen 19, Hägersten, Sweden
Author information
Article
Publisher ID:
PGENETICS-D-18-01290
DOI: 10.1371/journal.pgen.1007780
PMC ID: 6258378
PubMed ID: 30419018
SO-VID: 1767f9c2-1b53-497c-addb-bf3be8016403
Copyright © © 2018 Nazaryan-Petersen et al
License:
This is an open access article distributed under the terms of the
Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided
the original author and source are credited.
History
Date
received
: 25
June
2018
Date
accepted
: 23
October
2018
Page count
Figures: 4,
Tables: 3,
Pages: 25
Funding
Funded by: SciLifeLab national sequencing projects grant
Award Recipient
:
ORCID: http://orcid.org/0000-0003-3811-5439
Valtteri Wirta
Funded by: the Swedish Research Council
Award ID: [2013-2603, 2017-02936]
Award Recipient
:
ORCID: http://orcid.org/0000-0003-0806-5602
Anna Lindstrand
Funded by: the Swedish Society for Medical Research big grant
Award Recipient
:
ORCID: http://orcid.org/0000-0003-0806-5602
Anna Lindstrand
Funded by: the Marianne and Marcus Wallenberg foundation
Award ID: [2014.0084]
Award Recipient
:
ORCID: http://orcid.org/0000-0003-0806-5602
Anna Lindstrand
Funded by: the Stockholm City Council
Award Recipient
:
ORCID: http://orcid.org/0000-0003-0806-5602
Anna Lindstrand
Funded by: the Ulf Lundahl memory fund through the Swedish Brain Foundation
Award Recipient
:
ORCID: http://orcid.org/0000-0003-0806-5602
Anna Lindstrand
Funded by: the Erik Rönnberg Foundation and the Danish Council for Independent Research
Award Recipient
:
ORCID: http://orcid.org/0000-0003-0806-5602
Anna Lindstrand
Funded by: the Danish Council for Independent Research - Medical Sciences
Award ID: [4183-00482B]
Award Recipient
:
ORCID: http://orcid.org/0000-0003-2304-0112
Niels Tommerup
This work was supported by the SciLifeLab national sequencing projects grant; the
Swedish Research Council [2013-2603, 2017-02936]; the Swedish Society for Medical
Research big grant; the Marianne and Marcus Wallenberg foundation [2014.0084]; the
Stockholm City Council; the Ulf Lundahl memory fund through the Swedish Brain Foundation;
the Erik Rönnberg Foundation and the Danish Council for Independent Research; the
Danish Council for Independent Research - Medical Sciences [4183-00482B]. The funders
had no role in study design, data collection and analysis, decision to publish, or
preparation of the manuscript
Categories
Subject:
Research Article
Subject:
Biology and Life Sciences
Subject:
Cell Biology
Subject:
Chromosome Biology
Subject:
Chromosomal Aberrations
Subject:
Chromosomal Duplications
Subject:
Biology and Life Sciences
Subject:
Cell Biology
Subject:
Chromosome Biology
Subject:
Chromosomal Aberrations
Subject:
Chromosomal Deletions
Subject:
Research and Analysis Methods
Subject:
Bioassays and Physiological Analysis
Subject:
Microarrays
Subject:
Biology and Life Sciences
Subject:
Computational Biology
Subject:
Genome Complexity
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genomics
Subject:
Genome Complexity
Subject:
Biology and life sciences
Subject:
Genetics
Subject:
DNA
Subject:
DNA repair
Subject:
Non-Homologous End Joining
Subject:
Biology and life sciences
Subject:
Biochemistry
Subject:
Nucleic acids
Subject:
DNA
Subject:
DNA repair
Subject:
Non-Homologous End Joining
Subject:
Biology and life sciences
Subject:
Genetics
Subject:
DNA
Subject:
DNA repair
Subject:
Microhomology-Mediated End Joining
Subject:
Biology and life sciences
Subject:
Biochemistry
Subject:
Nucleic acids
Subject:
DNA
Subject:
DNA repair
Subject:
Microhomology-Mediated End Joining
Subject:
Biology and Life Sciences
Subject:
Computational Biology
Subject:
Genome Analysis
Subject:
Genomic Libraries
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genomics
Subject:
Genome Analysis
Subject:
Genomic Libraries
Subject:
Biology and Life Sciences
Subject:
Molecular Biology
Subject:
Molecular Biology Techniques
Subject:
Sequencing Techniques
Subject:
Genome Sequencing
Subject:
Research and Analysis Methods
Subject:
Molecular Biology Techniques
Subject:
Sequencing Techniques
Subject:
Genome Sequencing
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