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      A rare gain of function mutation in a wheat tandem kinase confers resistance to powdery mildew

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          Abstract

          Powdery mildew, caused by Blumeria graminis f. sp. tritici ( Bgt), is one of the most destructive diseases that pose a great threat to wheat production. Wheat landraces represent a rich source of powdery mildew resistance. Here, we report the map-based cloning of powdery mildew resistance gene Pm24 from Chinese wheat landrace Hulutou. It encodes a tandem kinase protein (TKP) with putative kinase-pseudokinase domains, designated WHEAT TANDEM KINASE 3 (WTK3). The resistance function of Pm24 was validated by transgenic assay, independent mutants, and allelic association analyses. Haplotype analysis revealed that a rare 6-bp natural deletion of lysine-glycine codons, endemic to wheat landraces of Shaanxi Province, China, in the kinase I domain (Kin I) of WTK3 is critical for the resistance function. Transgenic assay of WTK3 chimeric variants revealed that only the specific two amino acid deletion, rather than any of the single or more amino acid deletions, in the Kin I of WTK3 is responsible for gaining the resistance function of WTK3 against the Bgt fungus.

          Abstract

          Powdery mildew is a major threat to world wheat yields. Here the authors describe the map-based cloning of Pm24, a gain-of-function powdery mildew resistance allele that encodes a tandem kinase-pseudokinase protein with a deletion in a kinase domain that is endemic to certain wheat landraces.

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          Most cited references37

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          A putative ABC transporter confers durable resistance to multiple fungal pathogens in wheat.

          Agricultural crops benefit from resistance to pathogens that endures over years and generations of both pest and crop. Durable disease resistance, which may be partial or complete, can be controlled by several genes. Some of the most devastating fungal pathogens in wheat are leaf rust, stripe rust, and powdery mildew. The wheat gene Lr34 has supported resistance to these pathogens for more than 50 years. Lr34 is now shared by wheat cultivars around the world. Here, we show that the LR34 protein resembles adenosine triphosphate-binding cassette transporters of the pleiotropic drug resistance subfamily. Alleles of Lr34 conferring resistance or susceptibility differ by three genetic polymorphisms. The Lr34 gene, which functions in the adult plant, stimulates senescence-like processes in the flag leaf tips and edges.
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            A recently evolved hexose transporter variant confers resistance to multiple pathogens in wheat.

            As there are numerous pathogen species that cause disease and limit yields of crops, such as wheat (Triticum aestivum), single genes that provide resistance to multiple pathogens are valuable in crop improvement. The mechanistic basis of multi-pathogen resistance is largely unknown. Here we use comparative genomics, mutagenesis and transformation to isolate the wheat Lr67 gene, which confers partial resistance to all three wheat rust pathogen species and powdery mildew. The Lr67 resistance gene encodes a predicted hexose transporter (LR67res) that differs from the susceptible form of the same protein (LR67sus) by two amino acids that are conserved in orthologous hexose transporters. Sugar uptake assays show that LR67sus, and related proteins encoded by homeoalleles, function as high-affinity glucose transporters. LR67res exerts a dominant-negative effect through heterodimerization with these functional transporters to reduce glucose uptake. Alterations in hexose transport in infected leaves may explain its ability to reduce the growth of multiple biotrophic pathogen species.
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              Genome sequencing and analysis of the model grass Brachypodium distachyon.

              Three subfamilies of grasses, the Ehrhartoideae, Panicoideae and Pooideae, provide the bulk of human nutrition and are poised to become major sources of renewable energy. Here we describe the genome sequence of the wild grass Brachypodium distachyon (Brachypodium), which is, to our knowledge, the first member of the Pooideae subfamily to be sequenced. Comparison of the Brachypodium, rice and sorghum genomes shows a precise history of genome evolution across a broad diversity of the grasses, and establishes a template for analysis of the large genomes of economically important pooid grasses such as wheat. The high-quality genome sequence, coupled with ease of cultivation and transformation, small size and rapid life cycle, will help Brachypodium reach its potential as an important model system for developing new energy and food crops.
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                Author and article information

                Contributors
                lihongjie@caas.cn
                zyliu@genetics.ac.cn
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                3 February 2020
                3 February 2020
                2020
                : 11
                : 680
                Affiliations
                [1 ]ISNI 0000000119573309, GRID grid.9227.e, State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, , The Innovative Academy of Seed Design, Chinese Academy of Sciences, ; Beijing, 100101 China
                [2 ]ISNI 0000 0004 0530 8290, GRID grid.22935.3f, College of Agronomy and Biotechnology, , China Agricultural University, ; Beijing, 100193 China
                [3 ]ISNI 0000 0004 1797 8419, GRID grid.410726.6, University of Chinese Academy of Sciences, ; Beijing, 100049 China
                [4 ]ISNI 0000 0004 1798 6793, GRID grid.411626.6, Plant Science and Technology College, , Beijing University of Agriculture, ; Beijing, 102206 China
                [5 ]GRID grid.464345.4, The National Engineering Laboratory of Crop Molecular Breeding, , Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, ; Beijing, 100081 China
                [6 ]ISNI 0000 0004 1758 5180, GRID grid.410632.2, Institute of Plant Protection and Soil Science, , Hubei Academy of Agricultural Sciences, ; Wuhan, 430064 China
                [7 ]ISNI 0000 0004 0530 8290, GRID grid.22935.3f, College of Horticulture, , China Agricultural University, ; Beijing, 100193 China
                [8 ]ISNI 0000 0004 1936 9684, GRID grid.27860.3b, Department of Plant Sciences, , University of California at Davis, ; Davis, CA 95616 USA
                [9 ]ISNI 0000 0004 0404 0958, GRID grid.463419.d, USDA-ARS West Regional Research Center, ; Albany, CA 94710 USA
                Author information
                http://orcid.org/0000-0002-5838-9632
                http://orcid.org/0000-0003-4982-4804
                http://orcid.org/0000-0002-9744-5887
                http://orcid.org/0000-0002-0427-6528
                http://orcid.org/0000-0002-6958-5233
                Article
                14294
                10.1038/s41467-020-14294-0
                6997164
                32015344
                121212d6-9fd9-4871-adec-25e2142aab97
                © The Author(s) 2020

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 19 July 2019
                : 19 December 2019
                Funding
                Funded by: Strategic Priority Research Program of the Chinese Academy of Sciences (XDA24010305)
                Categories
                Article
                Custom metadata
                © The Author(s) 2020

                Uncategorized
                natural variation in plants,plant breeding,plant immunity
                Uncategorized
                natural variation in plants, plant breeding, plant immunity

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