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      Peptide Nucleic Acids and Gene Editing: Perspectives on Structure and Repair

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          Abstract

          Unusual nucleic acid structures are salient triggers of endogenous repair and can occur in sequence-specific contexts. Peptide nucleic acids (PNAs) rely on these principles to achieve non-enzymatic gene editing. By forming high-affinity heterotriplex structures within the genome, PNAs have been used to correct multiple human disease-relevant mutations with low off-target effects. Advances in molecular design, chemical modification, and delivery have enabled systemic in vivo application of PNAs resulting in detectable editing in preclinical mouse models. In a model of β-thalassemia, treated animals demonstrated clinically relevant protein restoration and disease phenotype amelioration, suggesting a potential for curative therapeutic application of PNAs to monogenic disorders. This review discusses the rationale and advances of PNA technologies and their application to gene editing with an emphasis on structural biochemistry and repair.

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          MicroRNA silencing for cancer therapy targeted to the tumor microenvironment

          SUMMARY PARAGRAPH MicroRNAs (miRNAs) are short non-coding RNAs expressed in different tissue and cell types that suppress the expression of target genes. As such, miRNAs are critical cogs in numerous biological processes 1,2 , and dysregulated miRNA expression is correlated with many human diseases. Certain miRNAs, called oncomiRs, play a causal role in the onset and maintenance of cancer when overexpressed. Tumors that depend on these miRNAs are said to display oncomiR addiction 3–5 . Some of the most effective anticancer therapies target oncogenes like EGFR and HER2; similarly, inhibition of oncomiRs using antisense oligomers (i.e. antimiRs) is an evolving therapeutic strategy 6,7 . However, the in vivo efficacy of current antimiR technologies is hindered by physiological and cellular barriers to delivery into targeted cells 8 . Here we introduce a novel antimiR delivery platform that targets the acidic tumor microenvironment, evades systemic clearance by the liver, and facilitates cell entry via a non-endocytic pathway. We found that the attachment of peptide nucleic acid (PNA) antimiRs to a peptide with a low pH-induced transmembrane structure (pHLIP) produced a novel construct that could target the tumor microenvironment, transport antimiRs across plasma membranes under acidic conditions such as those found in solid tumors (pH ~6), and effectively inhibit the miR-155 oncomiR in a mouse model of lymphoma. This study introduces a new paradigm in the use of antimiRs as anti-cancer drugs, which can have broad impacts on the field of targeted drug delivery.
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            PNA hybridizes to complementary oligonucleotides obeying the Watson-Crick hydrogen-bonding rules.

            DNA analogues are currently being intensely investigated owing to their potential as gene-targeted drugs. Furthermore, their properties and interaction with DNA and RNA could provide a better understanding of the structural features of natural DNA that determine its unique chemical, biological and genetic properties. We recently designed a DNA analogue, PNA, in which the backbone is structurally homomorphous with the deoxyribose backbone and consists of N-(2-aminoethyl)glycine units to which the nucleobases are attached. We showed that PNA oligomers containing solely thymine and cytosine can hybridize to complementary oligonucleotides, presumably by forming Watson-Crick-Hoogsteen (PNA)2-DNA triplexes, which are much more stable than the corresponding DNA-DNA duplexes, and bind to double-stranded DNA by strand displacement. We report here that PNA containing all four natural nucleobases hybridizes to complementary oligonucleotides obeying the Watson-Crick base-pairing rules, and thus is a true DNA mimic in terms of base-pair recognition.
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              Sequence-selective recognition of DNA by strand displacement with a thymine-substituted polyamide

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                Author and article information

                Contributors
                Role: Academic Editor
                Journal
                Molecules
                Molecules
                molecules
                Molecules
                MDPI
                1420-3049
                08 February 2020
                February 2020
                : 25
                : 3
                : 735
                Affiliations
                [1 ]Department of Genetics, Yale University School of Medicine, New Haven, CT 06520, USA; nicholas.economos@ 123456yale.edu (N.G.E.); elias.quijano@ 123456yale.edu (E.Q.)
                [2 ]Department of Therapeutic Radiology, Yale University School of Medicine, New Haven, CT 06520, USA; stanley.oyaghire@ 123456yale.edu
                [3 ]Department of Biomedical Engineering, Yale University, New Haven, CT 06511, USA; adele.ricciardi@ 123456yale.edu (A.S.R.); Mark.saltzman@ 123456yale.edu (W.M.S.)
                Author notes
                [* ]Correspondence: peter.glazer@ 123456yale.edu
                Author information
                https://orcid.org/0000-0003-4691-808X
                https://orcid.org/0000-0003-2637-8522
                https://orcid.org/0000-0003-4525-5560
                Article
                molecules-25-00735
                10.3390/molecules25030735
                7037966
                32046275
                0a191198-6700-48bf-89f2-99e2a046fb52
                © 2020 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 16 January 2020
                : 06 February 2020
                Categories
                Review

                peptide nucleic acids,pna,triplex,gene editing,structure,recombination,repair,nanoparticles,β-thalassemia,cystic fibrosis

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