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      Comprehensive Mass Spectrometry Workflows to Systematically Elucidate Transformation Processes of Organic Micropollutants: A Case Study on the Photodegradation of Four Pharmaceuticals

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          Abstract

          Organic micropollutants (OMPs) in the aquatic environment challenge conventional water treatment processes. Advanced oxidation processes, such as UV photolysis, serve as effective strategies to remove OMPs. However, these often yield unknown transformation products (TPs). High-resolution mass spectrometry (HRMS)-based non-target analysis (NTA) is commonly used to screen large numbers of chemicals but faces specific challenges such as low concentrations of compounds of interest, lack of reference standards, and the need for sophisticated data analysis workflows when used for TP identification. This article describes comprehensive workflows to study UV photolysis-related processes and the resulting TPs, by combining an automated photodegradation setup and HRMS and advanced NTA approaches. Four pharmaceuticals were successfully degraded in a case study, and 38 NTA features were effectively prioritized from complex sample matrices and identified as TPs through complementary approaches developed in this work. The identified TPs were structurally diverse and mostly novel. Semi-quantitation suggested that the TPs explained a relevant part of the parent removal. The developed workflows are a step toward systematic comprehensive analysis of transformation processes in water and beyond. The openly available data-processing tools and data enhance transformation data repositories and algorithms and support NTA studies in general.

          Abstract

          We demonstrate tools and open-source workflows to systematically identify and exchange information about unknown chemicals formed from environmental pollutants during common oxidative water treatment processes.

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          Identifying small molecules via high resolution mass spectrometry: communicating confidence.

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            PubChem 2023 update

            PubChem (https://pubchem.ncbi.nlm.nih.gov) is a popular chemical information resource that serves a wide range of use cases. In the past two years, a number of changes were made to PubChem. Data from more than 120 data sources was added to PubChem. Some major highlights include: the integration of Google Patents data into PubChem, which greatly expanded the coverage of the PubChem Patent data collection; the creation of the Cell Line and Taxonomy data collections, which provide quick and easy access to chemical information for a given cell line and taxon, respectively; and the update of the bioassay data model. In addition, new functionalities were added to the PubChem programmatic access protocols, PUG-REST and PUG-View, including support for target-centric data download for a given protein, gene, pathway, cell line, and taxon and the addition of the ‘standardize’ option to PUG-REST, which returns the standardized form of an input chemical structure. A significant update was also made to PubChemRDF. The present paper provides an overview of these changes.
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              Occurrence, genotoxicity, and carcinogenicity of regulated and emerging disinfection by-products in drinking water: a review and roadmap for research.

              Disinfection by-products (DBPs) are formed when disinfectants (chlorine, ozone, chlorine dioxide, or chloramines) react with naturally occurring organic matter, anthropogenic contaminants, bromide, and iodide during the production of drinking water. Here we review 30 years of research on the occurrence, genotoxicity, and carcinogenicity of 85 DBPs, 11 of which are currently regulated by the U.S., and 74 of which are considered emerging DBPs due to their moderate occurrence levels and/or toxicological properties. These 74 include halonitromethanes, iodo-acids and other unregulated halo-acids, iodo-trihalomethanes (THMs), and other unregulated halomethanes, halofuranones (MX [3-chloro-4-(dichloromethyl)-5-hydroxy-2(5H)-furanone] and brominated MX DBPs), haloamides, haloacetonitriles, tribromopyrrole, aldehydes, and N-nitrosodimethylamine (NDMA) and other nitrosamines. Alternative disinfection practices result in drinking water from which extracted organic material is less mutagenic than extracts of chlorinated water. However, the levels of many emerging DBPs are increased by alternative disinfectants (primarily ozone or chloramines) compared to chlorination, and many emerging DBPs are more genotoxic than some of the regulated DBPs. Our analysis identified three categories of DBPs of particular interest. Category 1 contains eight DBPs with some or all of the toxicologic characteristics of human carcinogens: four regulated (bromodichloromethane, dichloroacetic acid, dibromoacetic acid, and bromate) and four unregulated DBPs (formaldehyde, acetaldehyde, MX, and NDMA). Categories 2 and 3 contain 43 emerging DBPs that are present at moderate levels (sub- to low-mug/L): category 2 contains 29 of these that are genotoxic (including chloral hydrate and chloroacetaldehyde, which are also a rodent carcinogens); category 3 contains the remaining 14 for which little or no toxicological data are available. In general, the brominated DBPs are both more genotoxic and carcinogenic than are chlorinated compounds, and iodinated DBPs were the most genotoxic of all but have not been tested for carcinogenicity. There were toxicological data gaps for even some of the 11 regulated DBPs, as well as for most of the 74 emerging DBPs. A systematic assessment of DBPs for genotoxicity has been performed for approximately 60 DBPs for DNA damage in mammalian cells and 16 for mutagenicity in Salmonella. A recent epidemiologic study found that much of the risk for bladder cancer associated with drinking water was associated with three factors: THM levels, showering/bathing/swimming (i.e., dermal/inhalation exposure), and genotype (having the GSTT1-1 gene). This finding, along with mechanistic studies, highlights the emerging importance of dermal/inhalation exposure to the THMs, or possibly other DBPs, and the role of genotype for risk for drinking-water-associated bladder cancer. More than 50% of the total organic halogen (TOX) formed by chlorination and more than 50% of the assimilable organic carbon (AOC) formed by ozonation has not been identified chemically. The potential interactions among the 600 identified DBPs in the complex mixture of drinking water to which we are exposed by various routes is not reflected in any of the toxicology studies of individual DBPs. The categories of DBPs described here, the identified data gaps, and the emerging role of dermal/inhalation exposure provide guidance for drinking water and public health research.
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                Author and article information

                Journal
                Environ Sci Technol
                Environ Sci Technol
                es
                esthag
                Environmental Science & Technology
                American Chemical Society
                0013-936X
                1520-5851
                14 February 2025
                25 February 2025
                : 59
                : 7
                : 3723-3736
                Affiliations
                []Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam , Science Park 904, Amsterdam 1098 XH, The Netherlands
                []Amsterdam Institute for Life and Environment, Vrije Universiteit Amsterdam , De Boelelaan 1108, Amsterdam 1081 HZ, The Netherlands
                [§ ]Analytical-Chemistry Group, van’t Hoff Institute for Molecular Sciences, University of Amsterdam , Science Park 904, Amsterdam 1098 XH, The Netherlands
                []Centre for Analytical Sciences Amsterdam , Science Park 904, Amsterdam 1098 XH, The Netherlands
                []Amsterdam School for Heritage, Memory and Material Culture, Conservation and Restoration of Cultural Heritage, University of Amsterdam , P.O. Box 94522, Amsterdam 1090 GN, The Netherlands
                [# ]Luxembourg Centre for Systems Biomedicine, University of Luxembourg , 6 avenue du Swing, Belvaux L-4367, Luxembourg
                []KWR Water Research Institute , Groningenhaven 7, Nieuwegein 3430 BB, The Netherlands
                Author notes
                Author information
                https://orcid.org/0000-0001-9401-3133
                https://orcid.org/0000-0001-9065-9797
                https://orcid.org/0000-0001-6868-8145
                Article
                10.1021/acs.est.4c09121
                11866921
                39951726
                076598c7-9ee0-4365-9491-f5c4c1733ec2
                © 2025 The Authors. Published by American Chemical Society

                Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained ( https://creativecommons.org/licenses/by/4.0/).

                History
                : 30 August 2024
                : 05 February 2025
                : 05 February 2025
                Funding
                Funded by: Fonds National de la Recherche Luxembourg, doi 10.13039/501100001866;
                Award ID: A18/BM/12341006
                Funded by: Nederlandse Organisatie voor Wetenschappelijk Onderzoek, doi 10.13039/501100003246;
                Award ID: 15506
                Categories
                Article
                Custom metadata
                es4c09121
                es4c09121

                General environmental science
                uv photolysis,advanced oxidation processes,in-line degradation,transformation products,non-target analysis workflows,open science

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