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      Clinical and Molecular Features of Epidermal Growth Factor Receptor (EGFR) Mutation Positive Non-Small-Cell Lung Cancer (NSCLC) Patients Treated with Tyrosine Kinase Inhibitors (TKIs): Predictive and Prognostic Role of Co-Mutations

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          Abstract

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          Co-mutations may affect EGFR-TKIs efficacy in advanced EGFR mutated NSCLC and could be associated with worse prognosis. Using a clinical next-generation sequencing (NGS) panel we retrospectively assessed the impact of co-alterations in 106 consecutive patients treated with front-line EGFR-TKIs. Clinical and molecular data were retrieved. According to our data, co-mutations do not seem to have any predictive nor prognostic role. Co-mutations are associated with younger age at diagnosis and lymph nodes metastases at baseline. No association with PD-L1 expression level was observed.

          Abstract

          Background: Tyrosine kinase inhibitors (TKIs) show variable efficacy in epidermal growth factor receptor mutation-positive (EGFR+) NSCLC patients, even in patients harbouring the same mutation. Co-alterations may predict different outcomes to TKIs. Methods: We retrospectively analysed all consecutive EGFR+ advanced NSCLC treated with first-line TKIs at our Institutions. NGS with a 22 genes clinical panel was performed on diagnostic specimens. PD-L1 expression was also evaluated. Results: Of the 106 analysed specimens, 59 showed concomitant pathogenic mutations. No differences in OS (mOS 22.8 vs. 29.5 months; p = 0.088), PFS (mPFS 10.9 vs. 11.2 months; p = 0.415) and ORR (55.9% vs. 68.1%; p = 0.202) were observed comparing patients without and with co-alterations. Subgroup analysis by EGFR mutation type and TKIs generation (1st/2nd vs. 3rd) did not show any difference too. No correlations of PD-L1 expression levels by co-mutational status were found. Significant associations with presence of co-alterations and younger age ( p = 0.018) and baseline lymph nodes metastases ( p = 0.032) were observed. Patients without concomitant alterations had a significant higher risk of bone progression (26.5% vs. 3.3%, p = 0.011). Conclusions: Pathogenic co-alterations does not seem to predict survival nor efficacy of EGFR TKIs in previously untreated advanced NSCLC.

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          Co-occurring genomic alterations in non-small-cell lung cancer biology and therapy

          The impressive clinical activity of small molecule receptor tyrosine kinase inhibitors (TKIs) for oncogene-addicted subgroups of non-small cell lung cancer (NSCLC) [for example those driven by activating mutations in the gene encoding epidermal growth factor receptor ( EGFR ) or rearrangements in the genes encoding the receptor tyrosine kinases anaplastic lymphoma kinase ( ALK ), ROS proto-oncogene 1 ( ROS1 ), and rearranged during transfection ( RET )] has established an oncogene-centric molecular classification paradigm in this disease. However, recent studies have revealed considerable phenotypic diversity downstream of tumor-initiating oncogenes. Co-occurring genomic alterations, particularly in tumor suppressor genes such as TP53 and LKB1 (also known as STK11 ), have emerged as core determinants of the molecular and clinical heterogeneity of oncogene-driven lung cancer subgroups through their effects on both tumor cell-intrinsic and non-cell-autonomous cancer hallmarks. In this review, we discuss the impact of co-mutations on the pathogenesis, biology, micro-environmental interactions, and therapeutic vulnerabilities of NSCLC and assess the challenges and opportunities that co-mutations present for personalized anti-cancer therapy, as well as the expanding field of precision immunotherapy. Co-occurring genomic alterations contribute to the heterogeneity of driver oncogene-defined non-small cell lung cancer (NSCLC) subgroups. This Review discusses the effects of co-mutations on the pathogenesis, biology, microenvironmental interactions, and therapeutic vulnerabilities of NSCLC.
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            Prognostic and predictive effects of TP53 co-mutation in patients with EGFR-mutated non-small cell lung cancer (NSCLC).

            TP53 mutations are common in non-small cell lung cancer (NSCLC) and have been reported as prognostic of poor outcome. The impact of TP53 co-mutations in epidermal growth factor receptor (EGFR)-mutated NSCLC is unclear.
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              Concurrent Alterations in EGFR-Mutant Lung Cancers Associated with Resistance to EGFR Kinase Inhibitors and Characterization of MTOR as a Mediator of Resistance

              Purpose: To identify molecular factors that determine duration of response to EGFR tyrosine kinase inhibitors and to identify novel mechanisms of drug resistance, we molecularly profiled EGFR-mutant tumors prior to treatment and after progression on EGFR TKI using targeted next-generation sequencing.Experimental Design: Targeted next-generation sequencing was performed on 374 consecutive patients with metastatic EGFR-mutant lung cancer. Clinical data were collected and correlated with somatic mutation data. Erlotinib resistance due to acquired MTOR mutation was functionally evaluated by in vivo and in vitro studies.Results: In 200 EGFR-mutant pretreatment samples, the most frequent concurrent alterations were mutations in TP53, PIK3CA, CTNNB1, and RB1 and focal amplifications in EGFR, TTF1, MDM2, CDK4, and FOXA1 Shorter time to progression on EGFR TKI was associated with amplification of ERBB2 (HR = 2.4, P = 0.015) or MET (HR = 3.7, P = 0.019), or mutation in TP53 (HR = 1.7, P = 0.006). In the 136 posttreatment samples, we identified known mechanisms of acquired resistance: EGFR T790M (51%), MET (7%), and ERBB2 amplifications (5%). In the 38 paired samples, novel acquired alterations representing putative resistance mechanisms included BRAF fusion, FGFR3 fusion, YES1 amplification, KEAP1 loss, and an MTOR E2419K mutation. Functional studies confirmed the contribution of the latter to reduced sensitivity to EGFR TKI in vitro and in vivoConclusions:EGFR-mutant lung cancers harbor a spectrum of concurrent alterations that have prognostic and predictive significance. By utilizing paired samples, we identified several novel acquired alterations that may be relevant in mediating resistance, including an activating mutation in MTOR further validated functionally. Clin Cancer Res; 24(13); 3108-18. ©2018 AACR.
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                Author and article information

                Contributors
                Role: Academic Editor
                Journal
                Cancers (Basel)
                Cancers (Basel)
                cancers
                Cancers
                MDPI
                2072-6694
                17 May 2021
                May 2021
                : 13
                : 10
                : 2425
                Affiliations
                [1 ]Thoracic Oncology Unit, Department of Oncology, San Luigi Gonzaga Hospital, University of Torino, 10043 Orbassano, Italy; tessa.sperone@ 123456edu.unito.it (T.S.); fabrizio.tabbo@ 123456unito.it (F.T.); francesco.passiglia@ 123456unito.it (F.P.); giorgio.scagliotti@ 123456unito.it (G.V.S.); silvia.novello@ 123456unito.it (S.N.)
                [2 ]Medical Oncology Unit, Department of Oncology, Mauriziano Umberto I Hospital, University of Torino, 10128 Torino, Italy; andrea.caglio@ 123456edu.unito.it (A.C.); massimo.dimaio@ 123456unito.it (M.D.M.)
                [3 ]Pathology Unit, Department of Oncology, San Luigi Gonzaga Hospital, University of Torino, 10043 Orbassano, Italy; alisti@ 123456live.it (A.L.); luisella.righi@ 123456unito.it (L.R.)
                [4 ]Department of Oncology, University of Torino, 10060 Candiolo, Italy; federico.bussolino@ 123456unito.it
                [5 ]Laboratory of Vascular Oncology, Candiolo Cancer Institute-IRCCS-FPO, 10060 Candiolo, Italy
                Author notes
                [†]

                Authors equally contributed to the work.

                Author information
                https://orcid.org/0000-0001-8525-2992
                https://orcid.org/0000-0001-8906-3785
                https://orcid.org/0000-0001-6646-958X
                Article
                cancers-13-02425
                10.3390/cancers13102425
                8156829
                01d3ab00-d7d5-47e5-8be8-781397ed7188
                © 2021 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( https://creativecommons.org/licenses/by/4.0/).

                History
                : 20 April 2021
                : 16 May 2021
                Categories
                Article

                epidermal growth factor receptor (egfr),non-small-cell lung cancer (nsclc),tyrosine kinase inhibitors (tkis),co-mutations,next-generation sequencing (ngs)

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