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      Activation of HIV Transcription with Short-Course Vorinostat in HIV-Infected Patients on Suppressive Antiretroviral Therapy

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          Abstract

          Human immunodeficiency virus (HIV) persistence in latently infected resting memory CD4+ T-cells is the major barrier to HIV cure. Cellular histone deacetylases (HDACs) are important in maintaining HIV latency and histone deacetylase inhibitors (HDACi) may reverse latency by activating HIV transcription from latently infected CD4+ T-cells. We performed a single arm, open label, proof-of-concept study in which vorinostat, a pan-HDACi, was administered 400 mg orally once daily for 14 days to 20 HIV-infected individuals on suppressive antiretroviral therapy (ART). The primary endpoint was change in cell associated unspliced (CA-US) HIV RNA in total CD4+ T-cells from blood at day 14. The study is registered at ClinicalTrials.gov (NCT01365065). Vorinostat was safe and well tolerated and there were no dose modifications or study drug discontinuations. CA-US HIV RNA in blood increased significantly in 18/20 patients (90%) with a median fold change from baseline to peak value of 7.4 (IQR 3.4, 9.1). CA-US RNA was significantly elevated 8 hours post drug and remained elevated 70 days after last dose. Significant early changes in expression of genes associated with chromatin remodeling and activation of HIV transcription correlated with the magnitude of increased CA-US HIV RNA. There were no statistically significant changes in plasma HIV RNA, concentration of HIV DNA, integrated DNA, inducible virus in CD4+ T-cells or markers of T-cell activation. Vorinostat induced a significant and sustained increase in HIV transcription from latency in the majority of HIV-infected patients. However, additional interventions will be needed to efficiently induce virus production and ultimately eliminate latently infected cells.

          Trial Registration

          ClinicalTrials.gov NCT01365065

          Author Summary

          The major barrier to curing HIV is the long term persistence of latently infected resting memory T-cells in HIV-infected patients on antiretroviral therapy (ART). One strategy being pursued to eliminate latently infected cells is to activate HIV production from latently infected cells with the aim of killing latently infected cells via virus induced cell death or stimulation of an HIV-specific immune response. Histone deacetylases (HDACs) are important in maintaining HIV latency. Vorinostat, an inhibitor of HDACs (HDACi) licensed for the treatment of some malignancies, has been shown in laboratory studies and a clinical study of selected individuals to disrupt HIV latency. We examined the ability of standard dose vorinostat given daily for 14 days to activate latent HIV infection in unselected HIV-infected individuals on ART. The study showed evidence of activation of latent HIV infection in 18/20 (90%) of individuals and was safe and generally well tolerated. There were significant early changes in host gene expression, which persisted during and after the period of vorinostat. No changes were seen in immune activation or number of latently infected cells. Vorinostat was able to activate latent HIV infection in most individuals. Additional interventions will be needed to eliminate latent HIV infection.

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          Most cited references41

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          Identification of a reservoir for HIV-1 in patients on highly active antiretroviral therapy.

          The hypothesis that quiescent CD4+ T lymphocytes carrying proviral DNA provide a reservoir for human immunodeficiency virus-type 1 (HIV-1) in patients on highly active antiretroviral therapy (HAART) was examined. In a study of 22 patients successfully treated with HAART for up to 30 months, replication-competent virus was routinely recovered from resting CD4+ T lymphocytes. The frequency of resting CD4+ T cells harboring latent HIV-1 was low, 0.2 to 16.4 per 10(6) cells, and, in cross-sectional analysis, did not decrease with increasing time on therapy. The recovered viruses generally did not show mutations associated with resistance to the relevant antiretroviral drugs. This reservoir of nonevolving latent virus in resting CD4+ T cells should be considered in deciding whether to terminate treatment in patients who respond to HAART.
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            Quantification of latent tissue reservoirs and total body viral load in HIV-1 infection.

            The capacity of HIV-1 to establish latent infection of CD4+ T cells may allow viral persistence despite immune responses and antiretroviral therapy. Measurements of infectious virus and viral RNA in plasma and of infectious virus, viral DNA and viral messenger RNA species in infected cells all suggest that HIV-1 replication continues throughout the course of infection. Uncertainty remains over what fraction of CD4+ T cells are infected and whether there are latent reservoirs for the virus. We show here that during the asymptomatic phase of infection there is an extremely low total body load of latently infected resting CD4+ T cells with replication-competent integrated provirus (<10(7) cells). The most prevalent form of HIV-1 DNA in resting and activated CD4+ T cells is a full-length, linear, unintegrated form that is not replication competent. The infection progresses even though at any given time in the lymphoid tissues integrated HIV-1 DNA is present in only a minute fraction of the susceptible populations, including resting and activated CD4+ T cells and macrophages.
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              Systems Biology of Seasonal Influenza Vaccination in Humans

              We used a systems biological approach to study innate and adaptive responses to influenza vaccination in humans, during 3 consecutive influenza seasons. Healthy adults were vaccinated with inactivated (TIV) or live attenuated (LAIV) influenza vaccines. TIV induced greater antibody titers and enhanced numbers of plasmablasts than LAIV. In TIV vaccinees, early molecular signatures correlated with, and accurately predicted, later antibody titers in two independent trials. Interestingly, the expression of Calcium/calmodulin-dependent kinase IV (CamkIV) at day 3 was inversely correlated with later antibody titers. Vaccination of CamkIV −/− mice with TIV induced enhanced antigen-specific antibody titers, demonstrating an unappreciated role for CaMKIV in the regulation of antibody responses. Thus systems approaches can predict immunogenicity, and reveal new mechanistic insights about vaccines.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS Pathog
                PLoS Pathog
                plos
                plospath
                PLoS Pathogens
                Public Library of Science (San Francisco, USA )
                1553-7366
                1553-7374
                November 2014
                13 November 2014
                : 10
                : 11
                : e1004473
                Affiliations
                [1 ]Department of Infectious Diseases, Alfred Hospital and Monash University, Melbourne, Victoria, Australia
                [2 ]Centre for Biomedical Research, Burnet Institute, Melbourne, Victoria, Australia
                [3 ]Doherty Institute for Infection and Immunity, University of Melbourne, Melbourne, Victoria, Australia
                [4 ]Vaccine Gene Therapy Institute Florida, Port St Lucie, Florida, United States of America
                [5 ]National Association of People Living with HIV Australia, Sydney, New South Wales, Australia
                [6 ]Peter MacCallum Cancer Institute, Melbourne, Victoria, Australia
                [7 ]Peter MacCallum Department of Oncology, University of Melbourne, Melbourne, Victoria, Australia
                [8 ]Westmead Millenium Institute, University of Sydney, Westmead, New South Wales, Australia
                [9 ]Karolinska Institutet, Stockholm, Sweden
                [10 ]University of California San Francisco, San Francisco, California, United States of America
                [11 ]Merck Research Laboratories, West Point, Pennsylvania, United States of America
                Duke University Medical Center, United States of America
                Author notes

                JHE, JM and JR's institution has received funding for clinical research from Merck, Sharp & Dohme, Janssen-Cilag, Gilead Sciences, Bristol-Myers Squibb and ViiV Healthcare. JFH's institution has received funding for investigator-initiated research and service on Advisory Boards from Merck, Sharp & Dohme, Janssen-Cilag, Gilead Sciences, and ViiV Healthcare. JW has been a community member of a Merck Sharpe Dohme Advisory Board. MHP has undertaken paid consultancies for Merck. SGD has received grant support from Merck and Gilead. NC has received grant support from Merck. DJH is an employee of and has stock ownership in Merck Sharpe and Dohme. SRL's institution has received honoraria from Merck, Gilead, Viiv Healthcare, Janssen and Bristol Myers Squibb for participation in educational and consulting activities. She has received grants for investigator initiated research from Merck and Gilead. All other authors report no conflicts of interest.This does not alter our adherence to all PLOS policies on sharing data and materials.

                Conceived and designed the experiments: JHE SRL. Performed the experiments: JHE FW AS KG JA MJC MZS JM PV GB JR NC RF FAP JZ SP LO RWJ BPM ES PUC RPS SRL. Analyzed the data: JHE FW KG JA MJC TS JM NC RF FAP JZ. Wrote the paper: JHE FW AS KG JA MJC MZS TS JM PV GB JR JW MHP JFH NC RF FAP JZ SP LO RWJ BPM ES SGD DJH PUC RPS SRL.

                Article
                PPATHOGENS-D-14-01500
                10.1371/journal.ppat.1004473
                4231123
                25393648
                01b0e130-e94c-4323-a39c-525ebd40e9af
                Copyright @ 2014

                This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 27 June 2014
                : 15 September 2014
                Page count
                Pages: 19
                Funding
                The study was supported in part by a research grant from the Investigator Initiated Studies Program of Merck Sharp & Dohme Corp. The opinions expressed in this paper are those of the authors and do not necessarily represent those of Merck Sharp & Dohme Corp. This work was supported in part by the Australian National Health and Medical Research Council (APP1042654, Dora Lush Postgraduate Scholarship APP607230, CJ Martin Overseas Biomedical Fellowship GNT0490988, Early Career Fellowship APP1037839) and the Division of AIDS, National Institute of Allergy and Infectious Disease, US National Institutes of Health (DARE: Delaney AIDS Research Enterprise; U19AI096109). RF is supported by the American Foundation for AIDS Research (108264). SRL is a NHMRC Practitioner Fellow and RWJ is an NHMRC Principal Research Fellow. The authors gratefully acknowledge the contribution to this work of the Victorian Operational Infrastructure Support Program received by the Burnet Institute. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Microbiology
                Medical Microbiology
                Microbial Pathogens
                Viral Pathogens
                Immunodeficiency Viruses
                HIV
                HIV-1
                HIV-2
                Retroviruses
                Organisms
                Viruses
                Medicine and health sciences
                Infectious diseases
                Viral diseases
                HIV infections
                Custom metadata
                The authors confirm that all data underlying the findings are fully available without restriction. All relevant data are within the paper and its Supporting Information files.

                Infectious disease & Microbiology
                Infectious disease & Microbiology

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