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      Biogeographical venom variation in the Indian spectacled cobra ( Naja naja) underscores the pressing need for pan-India efficacious snakebite therapy

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          Abstract

          Background

          Snake venom composition is dictated by various ecological and environmental factors, and can exhibit dramatic variation across geographically disparate populations of the same species. This molecular diversity can undermine the efficacy of snakebite treatments, as antivenoms produced against venom from one population may fail to neutralise others. India is the world’s snakebite hotspot, with 58,000 fatalities and 140,000 morbidities occurring annually. Spectacled cobra ( Naja naja) and Russell’s viper ( Daboia russelii) are known to cause the majority of these envenomations, in part due to their near country-wide distributions. However, the impact of differing ecologies and environment on their venom compositions has not been comprehensively studied.

          Methods

          Here, we used a multi-disciplinary approach consisting of venom proteomics, biochemical and pharmacological analyses, and in vivo research to comparatively analyse N. naja venoms across a broad region (>6000 km; seven populations) covering India’s six distinct biogeographical zones.

          Findings

          By generating the most comprehensive pan-Indian proteomic and toxicity profiles to date, we unveil considerable differences in the composition, pharmacological effects and potencies of geographically-distinct venoms from this species and, through the use of immunological assays and preclinical experiments, demonstrate alarming repercussions on antivenom therapy. We find that commercially-available antivenom fails to effectively neutralise envenomations by the pan-Indian populations of N. naja, including a complete lack of neutralisation against the desert Naja population.

          Conclusion

          Our findings highlight the significant influence of ecology and environment on snake venom composition and potency, and stress the pressing need to innovate pan-India effective antivenoms to safeguard the lives, limbs and livelihoods of the country’s 200,000 annual snakebite victims.

          Author summary

          Annually, India is burdened by the highest number of snake envenomations across the globe, with over 58,000 fatalities and three times the number of morbidities, predominantly affecting the rural agrarian communities. The spectacled cobra ( Naja naja) and Russell’s viper ( Daboia russelii) are responsible for the vast majority of envenomations in the country, in part, due to their near country-wide distributions. In this study, we unveil the astounding differences in venom composition of N. naja from six different biogeographical zones across the country (>6000 km). We provide a comprehensive account of their disparate venom proteomic profiles, biochemical and pharmacological effects, and the associated potencies. Our study uncovers alarming differences in the efficacy of the marketed polyvalent antivenoms in neutralising these venoms, thereby, emphasising the pressing need to develop dose-efficacious and pan-India effective antivenoms for the treatment of snakebites in the country. This study also highlights the significant influence of ecology and diverse environments on the venom variability, insinuating the necessity for innovating cost-effective and pan-India efficacious solutions to safeguard the lives, limbs and livelihoods of India’s two hundred thousand annual snakebite victims.

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          Most cited references99

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          A Rapid and Sensitive Method for the Quantitation of Microgram Quantities of Protein Utilizing the Principle of Protein-Dye Binding

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            Structural absorption by barbule microstructures of super black bird of paradise feathers

            Many studies have shown how pigments and internal nanostructures generate color in nature. External surface structures can also influence appearance, such as by causing multiple scattering of light (structural absorption) to produce a velvety, super black appearance. Here we show that feathers from five species of birds of paradise (Aves: Paradisaeidae) structurally absorb incident light to produce extremely low-reflectance, super black plumages. Directional reflectance of these feathers (0.05–0.31%) approaches that of man-made ultra-absorbent materials. SEM, nano-CT, and ray-tracing simulations show that super black feathers have titled arrays of highly modified barbules, which cause more multiple scattering, resulting in more structural absorption, than normal black feathers. Super black feathers have an extreme directional reflectance bias and appear darkest when viewed from the distal direction. We hypothesize that structurally absorbing, super black plumage evolved through sensory bias to enhance the perceived brilliance of adjacent color patches during courtship display.
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              Complex cocktails: the evolutionary novelty of venoms.

              Venoms have evolved on numerous occasions throughout the animal kingdom. These 'biochemical weapon systems' typically function to facilitate, or protect the producing animal from, predation. Most venomous animals remain unstudied despite venoms providing model systems for investigating predator-prey interactions, molecular evolution, functional convergence, and novel targets for pharmaceutical discovery. Through advances in 'omic' technologies, venom composition data have recently become available for several venomous lineages, revealing considerable complexity in the processes responsible for generating the genetic and functional diversity observed in many venoms. Here, we review these recent advances and highlight the ecological and evolutionary novelty of venom systems. Copyright © 2012 Elsevier Ltd. All rights reserved.
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                Author and article information

                Contributors
                Role: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: Writing – original draftRole: Writing – review & editing
                Role: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: Writing – review & editing
                Role: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: Writing – review & editing
                Role: Formal analysisRole: InvestigationRole: Writing – review & editing
                Role: Resources
                Role: Writing – review & editing
                Role: Resources
                Role: ConceptualizationRole: Formal analysisRole: Funding acquisitionRole: InvestigationRole: MethodologyRole: Project administrationRole: ResourcesRole: SupervisionRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS Negl Trop Dis
                PLoS Negl Trop Dis
                plos
                plosntds
                PLoS Neglected Tropical Diseases
                Public Library of Science (San Francisco, CA USA )
                1935-2727
                1935-2735
                18 February 2021
                February 2021
                : 15
                : 2
                : e0009150
                Affiliations
                [1 ] Evolutionary Venomics Lab. Centre for Ecological Sciences, Indian Institute of Science, Bangalore, Karnataka, India
                [2 ] The Liana Trust, Survey #1418/1419 Rathnapuri, Hunsur, Karnataka, India
                [3 ] Centre for Snakebite Research & Interventions, Liverpool School of Tropical Medicine, Pembroke Place, Liverpool, United Kingdom
                [4 ] Madras Crocodile Bank Trust/Centre for Herpetology, Mamallapuram, Tamil Nadu, India
                Goethe University, GERMANY
                Author notes

                The authors have declared that no competing interests exist.

                Author information
                https://orcid.org/0000-0002-9151-7771
                https://orcid.org/0000-0003-2632-6837
                https://orcid.org/0000-0002-1409-2984
                https://orcid.org/0000-0002-8035-4719
                https://orcid.org/0000-0001-8263-9139
                https://orcid.org/0000-0003-0998-1581
                Article
                PNTD-D-20-00859
                10.1371/journal.pntd.0009150
                7924803
                33600405
                004e0706-713b-4f1e-a4be-8dfdd9a15dd0
                © 2021 Senji Laxme et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 16 May 2020
                : 18 January 2021
                Page count
                Figures: 7, Tables: 0, Pages: 28
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/501100002992, Department for International Development, UK Government;
                Award ID: IAVI/BES/KASU/0002
                Award Recipient :
                Funded by: Department of Biotechnology, India
                Award ID: DBT-IISc Partnership Program
                Award Recipient :
                Funded by: Department of Science and Technology, India
                Award ID: DST-INSPIRE Faculty Award (DST/INSPIRE/04/2017/000071)
                Award Recipient :
                Funded by: Department of Science and Technology, India
                Award ID: SR/FST/LS-II/2018/233
                Award Recipient :
                Funded by: Wellcome Trust and Royal Society
                Award ID: Sir Henry Dale Fellowship (200517/Z/16/Z)
                Award Recipient :
                Funded by: USV Private Limited
                K.S. was supported by the following grants: Department for International Development ( https://www.gov.uk/world/organisations/dfid-india) ([DFID: grant IAVI/BES/KASU/0002]. The views expressed do not necessarily reflect the UK Government’s official policies); the Department of Biotechnology-IISc Partnership Program ( http://dbtindia.gov.in/); DST-INSPIRE Faculty Award (DST/INSPIRE/04/2017/000071, http://online-inspire.gov.in/), and the DST-FIST (SR/FST/LS-II/2018/233, http://www.fist-dst.org/). N.R.C. acknowledges support from a Sir Henry Dale Fellowship (200517/Z/16/Z) jointly funded by the Wellcome Trust and Royal Society. Venom sampling equipment and expeditions were supported by USV Private Limited ( http://www.usvindia.com). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Toxicology
                Toxic Agents
                Toxins
                Venoms
                Medicine and Health Sciences
                Pathology and Laboratory Medicine
                Toxicology
                Toxic Agents
                Toxins
                Venoms
                Biology and Life Sciences
                Organisms
                Eukaryota
                Animals
                Vertebrates
                Amniotes
                Reptiles
                Squamates
                Snakes
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                Zoology
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                Amniotes
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                Snakes
                Biology and Life Sciences
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                Biology and Life Sciences
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                Pathology and Laboratory Medicine
                Toxicology
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                Biology and Life Sciences
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                Ecology
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                Ecology and Environmental Sciences
                Terrestrial Environments
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                Biology and life sciences
                Biochemistry
                Proteins
                DNA-binding proteins
                Nucleases
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                Biology and Life Sciences
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                Custom metadata
                vor-update-to-uncorrected-proof
                2021-03-02
                All relevant data are within the manuscript and its Supporting Information files. The mass spectrometry data generated in this study has been deposited to the ProteomeXchange Consortium via the PRIDE partner repository with data identifier: PXD020497 ( https://www.ebi.ac.uk/pride/archive?keyword=PXD020497). Additionally, an archive containing the results of proteomics analyses in HTML format has been added to S1 Data.

                Infectious disease & Microbiology
                Infectious disease & Microbiology

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