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      Molecular dynamics simulation of the interaction of food proteins with small molecules.

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          Abstract

          Molecular dynamics (MD) simulation is used increasingly to explore mechanisms of interactions and conformational relationships between food proteins and other food compounds. MD simulation can better understand the structural changes between food proteins and small molecules at the molecular level. Based on the current extensive literature, visualization models established by MD simulation in the future may provide greater insight into finer molecular changes in food proteins and small molecules interactions. Development and software as well as force fields used in MD simulation for food protein and interaction systems were reviewed. The review focuses on the status of MD simulation technology in exploring food protein functional mechanisms, and bioactive substance delivery, food processing and storage, and food additives. Finally, current trends and applications were considered. This review provides an overview for the wider application of MD simulation technology in the food protein research field.

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          Most cited references120

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          VMD: Visual molecular dynamics

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            GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers

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              The Amber biomolecular simulation programs.

              We describe the development, current features, and some directions for future development of the Amber package of computer programs. This package evolved from a program that was constructed in the late 1970s to do Assisted Model Building with Energy Refinement, and now contains a group of programs embodying a number of powerful tools of modern computational chemistry, focused on molecular dynamics and free energy calculations of proteins, nucleic acids, and carbohydrates. (c) 2005 Wiley Periodicals, Inc.
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                Author and article information

                Journal
                Food Chem
                Food chemistry
                Elsevier BV
                1873-7072
                0308-8146
                Mar 30 2023
                : 405
                : Pt A
                Affiliations
                [1 ] Meat Processing Key Laboratory of Sichuan Province, School of Food and Biological Engineering, Chengdu University, Chengdu 610106, China.
                [2 ] Meat Processing Key Laboratory of Sichuan Province, School of Food and Biological Engineering, Chengdu University, Chengdu 610106, China. Electronic address: diwulab@163.com.
                [3 ] School of Chemical Engineering, Sichuan University, Chengdu 610065, China.
                Article
                S0308-8146(22)02786-8
                10.1016/j.foodchem.2022.134824
                36370554
                2b56ee92-b12a-4dc5-8967-cd4946fcd752
                History

                Force field,Food protein,Interaction,Molecular dynamics,Prospects

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