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      DnaSP, DNA polymorphism analyses by the coalescent and other methods.

      Bioinformatics
      Algorithms, Gene Expression Profiling, methods, Polymorphism, Genetic, genetics, Sequence Alignment, Sequence Analysis, DNA, Software, User-Computer Interface

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          Abstract

          DnaSP is a software package for the analysis of DNA polymorphism data. Present version introduces several new modules and features which, among other options allow: (1) handling big data sets (approximately 5 Mb per sequence); (2) conducting a large number of coalescent-based tests by Monte Carlo computer simulations; (3) extensive analyses of the genetic differentiation and gene flow among populations; (4) analysing the evolutionary pattern of preferred and unpreferred codons; (5) generating graphical outputs for an easy visualization of results. The software package, including complete documentation and examples, is freely available to academic users from: http://www.ub.es/dnasp

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