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      Supramolecular Arrangement of Lignosulfonate-Based Iron Heteromolecular Complexes and Consequences of Their Interaction with Ca 2+ at Alkaline pH and Fe Plant Root Uptake Mechanisms

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          Abstract

          Previous studies have shown that natural heteromolecular complexes might be an alternative to synthetic chelates to correct iron (Fe) deficiency. To investigate the mechanism of action of these complexes, we have studied their interaction with Ca 2+ at alkaline pH, Fe-binding stability, Fe-root uptake in cucumber, and chemical structure using molecular modeling. The results show that a heteromolecular Fe complex including citric acid and lignosulfonate as binding ligands (Ls-Cit) forms a supramolecular system in solution with iron citrate interacting with the hydrophobic inner core of the lignosulfonate system. These structural features are associated with high stability against Ca 2+ at basic pH. Likewise, unlike Fe-EDDHA, root Fe uptake from Ls-Cit implies the activation of the main root responses under Fe deficiency at the transcriptional level but not at the post-transcriptional level. These results are consistent with the involvement of some plant responses to Fe deficiency in the plant assimilation of complexed Fe in Ls-Cit under field conditions.

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          RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview

          With both catalytic and genetic functions, ribonucleic acid (RNA) is perhaps the most pluripotent chemical species in molecular biology, and its functions are intimately linked to its structure and dynamics. Computer simulations, and in particular atomistic molecular dynamics (MD), allow structural dynamics of biomolecular systems to be investigated with unprecedented temporal and spatial resolution. We here provide a comprehensive overview of the fast-developing field of MD simulations of RNA molecules. We begin with an in-depth, evaluatory coverage of the most fundamental methodological challenges that set the basis for the future development of the field, in particular, the current developments and inherent physical limitations of the atomistic force fields and the recent advances in a broad spectrum of enhanced sampling methods. We also survey the closely related field of coarse-grained modeling of RNA systems. After dealing with the methodological aspects, we provide an exhaustive overview of the available RNA simulation literature, ranging from studies of the smallest RNA oligonucleotides to investigations of the entire ribosome. Our review encompasses tetranucleotides, tetraloops, a number of small RNA motifs, A-helix RNA, kissing-loop complexes, the TAR RNA element, the decoding center and other important regions of the ribosome, as well as assorted others systems. Extended sections are devoted to RNA–ion interactions, ribozymes, riboswitches, and protein/RNA complexes. Our overview is written for as broad of an audience as possible, aiming to provide a much-needed interdisciplinary bridge between computation and experiment, together with a perspective on the future of the field.
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            Synthesis, nature and utility of universal iron chelator – Siderophore: A review

            Siderophores, the secondary metabolite of various microorganisms are ferric ion specific chelators secreted under iron stressed condition. These non-ribosomal peptides have been classified as catecholate, hydroxamate, carboxylate and mixed types. Recent studies focus on discovery of possible mammalian siderophores. The biosynthesis pathway including non-ribosomal dependent as well as non-ribosomal independent pathways are of great interest now a days. Many significant roles of siderophores such as virulence in pathogens, oxidative stress tolerance, classification of organisms etc. are being discovered. Studies on siderophore utilization in bioremediation and other heavy metal chelation have increased in past decade. The iron chelation ability of siderophores is being recently studied with regards to malignant cancerous cells. Not only this, it has been found that they possess antimicrobial properties which can be utilized against number of microbes. This review covers all recent aspects of siderophore and its applications.
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              Metal Sensing by the IRT1 Transporter-Receptor Orchestrates Its Own Degradation and Plant Metal Nutrition

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                Author and article information

                Journal
                J Agric Food Chem
                J Agric Food Chem
                jf
                jafcau
                Journal of Agricultural and Food Chemistry
                American Chemical Society
                0021-8561
                1520-5118
                18 July 2023
                02 August 2023
                : 71
                : 30
                : 11404-11417
                Affiliations
                []Universidad de Navarra , Instituto de Biodiversidad y Medioambiente BIOMA, Irunlarrea 1, 31008 Pamplona, España
                []Universidad de Navarra , Facultad de Ciencias, Departamento de Biología Ambiental, Irunlarrea 1, 31008 Pamplona, España
                Author notes
                Author information
                https://orcid.org/0000-0003-3396-4837
                https://orcid.org/0000-0001-9572-392X
                https://orcid.org/0000-0001-6352-9612
                Article
                10.1021/acs.jafc.3c03474
                10401718
                37462422
                8d5ebbca-c0b3-4f71-b726-e63e5b3aad57
                © 2023 The Authors. Published by American Chemical Society

                Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained ( https://creativecommons.org/licenses/by/4.0/).

                History
                : 25 May 2023
                : 03 July 2023
                : 29 June 2023
                Funding
                Funded by: Universidad de Navarra, doi 10.13039/501100004435;
                Award ID: NA
                Funded by: Groupe Roullier, doi NA;
                Award ID: NA
                Funded by: Gobierno de España, doi NA;
                Award ID: NA
                Funded by: Gobierno de Navarra, doi 10.13039/501100017266;
                Award ID: NA
                Categories
                Article
                Custom metadata
                jf3c03474
                jf3c03474

                Food science & Technology
                iron chelates,heteromolecular iron chelates,heteromolecular iron complexes,iron chlorosis,root iron deficiency responses,transcriptional control,post-transcriptional control,fe(iii) chelate reductase,h+-atpase

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