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      Isocitrate dehydrogenase 3b is required for spermiogenesis but dispensable for retinal viability

      research-article
      1 , 2 , 3 , 1 , 2 , 4 , 5 , 1 , 2 , 1 , 2 , 6 , 1 , 2 , 7 , 1 , 1 , 2 , 2 , 4 , 5 , 1 , 2 , 1 , 2 ,
      The Journal of Biological Chemistry
      American Society for Biochemistry and Molecular Biology
      TCA cycle, IDH3B, metabolism, spermatogenesis, spermiogenesis, spermatozoa, male infertility, retinal degeneration, αKG, α-ketoglutarate, ERG, electroretinogram, IDH, isocitrate dehydrogenase, IMPDH1, inosine monophosphate dehydrogenase 1, OCT, optical coherence tomography, PUFA, polyunsaturated fatty acid, TCA, tricarboxylic acid, TEM, transmission electron microscope

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          Abstract

          Isocitrate dehydrogenase 3 (IDH3) is a key enzyme in the mitochondrial tricarboxylic acid (TCA) cycle, which catalyzes the decarboxylation of isocitrate into α-ketoglutarate and concurrently converts NAD + into NADH. Dysfunction of IDH3B, the β subunit of IDH3, has been previously correlated with retinal degeneration and male infertility in humans, but tissue-specific effects of IDH3 dysfunction are unclear. Here, we generated Idh3b-KO mice and found that IDH3B is essential for IDH3 activity in multiple tissues. We determined that loss of Idh3b in mice causes substantial accumulation of isocitrate and its precursors in the TCA cycle, particularly in the testes, whereas the levels of the downstream metabolites remain unchanged or slightly increased. However, the Idh3b-KO mice did not fully recapitulate the defects observed in humans. Global deletion of Idh3b only causes male infertility but not retinal degeneration in mice. Our investigation showed that loss of Idh3b causes an energetic deficit and disrupts the biogenesis of acrosome and flagellum, resulting in spermiogenesis arrestment in sperm cells. Together, we demonstrate that IDH3B controls its substrate levels in the TCA cycle, and it is required for sperm mitochondrial metabolism and spermiogenesis, highlighting the importance of the tissue-specific function of the ubiquitous TCA cycle.

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          Most cited references71

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          The Emerging Hallmarks of Cancer Metabolism.

          Tumorigenesis is dependent on the reprogramming of cellular metabolism as both direct and indirect consequence of oncogenic mutations. A common feature of cancer cell metabolism is the ability to acquire necessary nutrients from a frequently nutrient-poor environment and utilize these nutrients to both maintain viability and build new biomass. The alterations in intracellular and extracellular metabolites that can accompany cancer-associated metabolic reprogramming have profound effects on gene expression, cellular differentiation, and the tumor microenvironment. In this Perspective, we have organized known cancer-associated metabolic changes into six hallmarks: (1) deregulated uptake of glucose and amino acids, (2) use of opportunistic modes of nutrient acquisition, (3) use of glycolysis/TCA cycle intermediates for biosynthesis and NADPH production, (4) increased demand for nitrogen, (5) alterations in metabolite-driven gene regulation, and (6) metabolic interactions with the microenvironment. While few tumors display all six hallmarks, most display several. The specific hallmarks exhibited by an individual tumor may ultimately contribute to better tumor classification and aid in directing treatment.
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            Mitochondrial TCA cycle metabolites control physiology and disease

            Mitochondria are signaling organelles that regulate a wide variety of cellular functions and can dictate cell fate. Multiple mechanisms contribute to communicate mitochondrial fitness to the rest of the cell. Recent evidence confers a new role for TCA cycle intermediates, generally thought to be important for biosynthetic purposes, as signaling molecules with functions controlling chromatin modifications, DNA methylation, the hypoxic response, and immunity. This review summarizes the mechanisms by which the abundance of different TCA cycle metabolites controls cellular function and fate in different contexts. We will focus on how these metabolites mediated signaling can affect physiology and disease.
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              Hypoxia promotes isocitrate dehydrogenase-dependent carboxylation of α-ketoglutarate to citrate to support cell growth and viability.

              Citrate is a critical metabolite required to support both mitochondrial bioenergetics and cytosolic macromolecular synthesis. When cells proliferate under normoxic conditions, glucose provides the acetyl-CoA that condenses with oxaloacetate to support citrate production. Tricarboxylic acid (TCA) cycle anaplerosis is maintained primarily by glutamine. Here we report that some hypoxic cells are able to maintain cell proliferation despite a profound reduction in glucose-dependent citrate production. In these hypoxic cells, glutamine becomes a major source of citrate. Glutamine-derived α-ketoglutarate is reductively carboxylated by the NADPH-linked mitochondrial isocitrate dehydrogenase (IDH2) to form isocitrate, which can then be isomerized to citrate. The increased IDH2-dependent carboxylation of glutamine-derived α-ketoglutarate in hypoxia is associated with a concomitant increased synthesis of 2-hydroxyglutarate (2HG) in cells with wild-type IDH1 and IDH2. When either starved of glutamine or rendered IDH2-deficient by RNAi, hypoxic cells are unable to proliferate. The reductive carboxylation of glutamine is part of the metabolic reprogramming associated with hypoxia-inducible factor 1 (HIF1), as constitutive activation of HIF1 recapitulates the preferential reductive metabolism of glutamine-derived α-ketoglutarate even in normoxic conditions. These data support a role for glutamine carboxylation in maintaining citrate synthesis and cell growth under hypoxic conditions.
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                Author and article information

                Contributors
                Journal
                J Biol Chem
                J Biol Chem
                The Journal of Biological Chemistry
                American Society for Biochemistry and Molecular Biology
                0021-9258
                1083-351X
                17 August 2022
                September 2022
                17 August 2022
                : 298
                : 9
                : 102387
                Affiliations
                [1 ]Department of Ophthalmology and Visual Sciences, West Virginia University, Morgantown, West Virginia, USA
                [2 ]Department of Biochemistry, West Virginia University, Morgantown, West Virginia, USA
                [3 ]Department of Pharmaceutical and Pharmacological Science, West Virginia University, Morgantown, West Virginia, USA
                [4 ]Eye Institute, Eye & ENT Hospital, Shanghai Medical College, Fudan University, Shanghai, China
                [5 ]NHC Key Laboratory of Myopia (Fudan University), Key Laboratory of Myopia, Chinese Academy of Medical Sciences, and Shanghai Key Laboratory of Visual Impairment and Restoration (Fudan University), Shanghai, China
                [6 ]Department of Biomedical Engineering Department, Stony Brook University, Stony Brook, New York, USA
                [7 ]Department of Ophthalmology, University of Washington, Seattle, Washington, USA
                Author notes
                []For correspondence: Jianhai Du jianhai.du@ 123456hsc.wvu.edu
                Article
                S0021-9258(22)00830-4 102387
                10.1016/j.jbc.2022.102387
                9478456
                35985423
                ffe49185-9e26-492c-a8bc-a2212d3a52a4
                © 2022 The Authors

                This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).

                History
                : 11 May 2022
                : 8 August 2022
                Categories
                Research Article

                Biochemistry
                tca cycle,idh3b,metabolism,spermatogenesis,spermiogenesis,spermatozoa,male infertility,retinal degeneration,αkg, α-ketoglutarate,erg, electroretinogram,idh, isocitrate dehydrogenase,impdh1, inosine monophosphate dehydrogenase 1,oct, optical coherence tomography,pufa, polyunsaturated fatty acid,tca, tricarboxylic acid,tem, transmission electron microscope

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