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      Epigenetics in hepatocellular carcinoma development and therapy: The tip of the iceberg

      review-article
      1 , 2 , 3 , 1 , 3 , 1 , 1 , 2 , 3 , , 1 , 2 , 3 ,
      JHEP Reports
      Elsevier
      Hepatocellular carcinoma, Epigenetics, Therapy, 5acC, 5-acetylcytosine, 5fC, 5-formylcytosine, 5hmC, 5-hydoxymethyl cytosine, 5mC, 5-methylcytosine, Acetyl-CoA, acetyl coenzyme A, α-KG, α-ketoglutarate, BER, base excision repair, BRD, bromodomain, CDA, cytidine deaminase, CGI, CpG island, CIMP, CGI methylator phenotype, CTLA-4, cytotoxic T-lymphocyte-associated protein 4, DNMT, DNA methyltransferase, DNMTi, DNMT inhibitor, FAD, flavin adenine dinucleotide, HAT, histone acetyltransferases, HCC, hepatocellular carcinoma, HDAC, histone deacetylase, HDACi, HDAC inhibitor, HDM, histone demethylase, HMT, histone methyltransferase, KMT, lysine methyltransferase, LSD/KDM, lysine specific demethylases, NAFLD, non-alcoholic fatty liver disease, ncRNAs, non-coding RNAs, NK, natural killer, NPC, nasopharyngeal carcinoma, PD1, programmed cell death protein 1, PD-L1, programmed cell death ligand-1, PHD, plant homeodomain, PTM, post-translational modification, SAM, S-adenosyl-L-methionine, TDG, thymidine-DNA-glycosylase, TERT, telomerase reverse transcriptase, TET, ten-eleven translocation, TME, tumour microenvironment, TSG, tumour suppressor gene, UHRF1, ubiquitin like with PHD and ring finger domains 1, VEGF, vascular endothelial growth factor

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          Summary

          Hepatocellular carcinoma (HCC) is a deadly tumour whose causative agents are generally well known, but whose pathogenesis remains poorly understood. Nevertheless, key genetic alterations are emerging from a heterogeneous molecular landscape, providing information on the tumorigenic process from initiation to progression. Among these molecular alterations, those that affect epigenetic processes are increasingly recognised as contributing to carcinogenesis from preneoplastic stages. The epigenetic machinery regulates gene expression through intertwined and partially characterised circuits involving chromatin remodelers, covalent DNA and histone modifications, and dedicated proteins reading these modifications. In this review, we summarise recent findings on HCC epigenetics, focusing mainly on changes in DNA and histone modifications and their carcinogenic implications. We also discuss the potential drugs that target epigenetic mechanisms for HCC treatment, either alone or in combination with current therapies, including immunotherapies.

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          Most cited references172

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          Atezolizumab plus Bevacizumab in Unresectable Hepatocellular Carcinoma

          The combination of atezolizumab and bevacizumab showed encouraging antitumor activity and safety in a phase 1b trial involving patients with unresectable hepatocellular carcinoma.
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            Hepatocellular Carcinoma

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              Functions of DNA methylation: islands, start sites, gene bodies and beyond.

              DNA methylation is frequently described as a 'silencing' epigenetic mark, and indeed this function of 5-methylcytosine was originally proposed in the 1970s. Now, thanks to improved genome-scale mapping of methylation, we can evaluate DNA methylation in different genomic contexts: transcriptional start sites with or without CpG islands, in gene bodies, at regulatory elements and at repeat sequences. The emerging picture is that the function of DNA methylation seems to vary with context, and the relationship between DNA methylation and transcription is more nuanced than we realized at first. Improving our understanding of the functions of DNA methylation is necessary for interpreting changes in this mark that are observed in diseases such as cancer.
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                Author and article information

                Contributors
                Journal
                JHEP Rep
                JHEP Rep
                JHEP Reports
                Elsevier
                2589-5559
                07 August 2020
                December 2020
                07 August 2020
                : 2
                : 6
                : 100167
                Affiliations
                [1 ]Hepatology Program CIMA, University of Navarra, Pamplona, Spain
                [2 ]National Institute for the Study of Liver and Gastrointestinal Diseases (CIBERehd, Carlos III Health Institute), Madrid, Spain
                [3 ]IdiSNA, Navarra Institute for Health Research, Pamplona, Spain
                Author notes
                []Corresponding authors. Address: Hepatology Program, CIMA, University of Navarra, Avda. Pio XII, n55, 31008 Pamplona, Spain. cberasain@ 123456unav.es maavila@ 123456unav.es
                Article
                S2589-5559(20)30101-4 100167
                10.1016/j.jhepr.2020.100167
                7585149
                33134907
                ffcb9b0a-418d-49e5-aa78-413cbd58e229
                © 2020 The Authors

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 1 July 2020
                : 22 July 2020
                : 24 July 2020
                Categories
                Review

                hepatocellular carcinoma,epigenetics,therapy,5acc, 5-acetylcytosine,5fc, 5-formylcytosine,5hmc, 5-hydoxymethyl cytosine,5mc, 5-methylcytosine,acetyl-coa, acetyl coenzyme a,α-kg, α-ketoglutarate,ber, base excision repair,brd, bromodomain,cda, cytidine deaminase,cgi, cpg island,cimp, cgi methylator phenotype,ctla-4, cytotoxic t-lymphocyte-associated protein 4,dnmt, dna methyltransferase,dnmti, dnmt inhibitor,fad, flavin adenine dinucleotide,hat, histone acetyltransferases,hcc, hepatocellular carcinoma,hdac, histone deacetylase,hdaci, hdac inhibitor,hdm, histone demethylase,hmt, histone methyltransferase,kmt, lysine methyltransferase,lsd/kdm, lysine specific demethylases,nafld, non-alcoholic fatty liver disease,ncrnas, non-coding rnas,nk, natural killer,npc, nasopharyngeal carcinoma,pd1, programmed cell death protein 1,pd-l1, programmed cell death ligand-1,phd, plant homeodomain,ptm, post-translational modification,sam, s-adenosyl-l-methionine,tdg, thymidine-dna-glycosylase,tert, telomerase reverse transcriptase,tet, ten-eleven translocation,tme, tumour microenvironment,tsg, tumour suppressor gene,uhrf1, ubiquitin like with phd and ring finger domains 1,vegf, vascular endothelial growth factor

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