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      Distinct patterns in the gut microbiota after surgical or medical therapy in obese patients

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          Abstract

          Bariatric surgery is highly successful in improving health compared to conventional dietary treatments. It has been suggested that the gut microbiota is a relevant factor in weight loss after bariatric surgery. Considering that bariatric procedures cause different rearrangements of the digestive tract, they probably have different effects on the gut microbiota. In this study, we compared the impact of medical treatment, sleeve gastrectomy and Roux-en-Y gastric bypass on the gut microbiota from obese subjects. Anthropometric and clinical parameters were registered before, 6 and 12 months after treatment. Fecal samples were collected and microbiota composition was studied before and six months post treatment using 16S rRNA gene sequencing and qPCR. In comparison to dietary treatment, changes in intestinal microbiota were more pronounced in patients subjected to surgery, observing a bloom in Proteobacteria. Interestingly, Bacteroidetes abundance was largely different after six months of each surgical procedure. Furthermore, changes in weight and BMI, or glucose metabolism, correlated positively with changes in these two phyla in these surgical procedures. These results indicate that distinct surgical procedures alter the gut microbiota differently, and changes in gut microbiota might contribute to health improvement. This study contributes to our understanding of the impact of weight loss surgery on the gut microbiota, and could be used to replicate this effect using targeted therapies.

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          Most cited references25

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          R: A language and environment for statistical computing

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            Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays.

            Here we describe a quantitative PCR-based approach to estimating the relative abundances of major taxonomic groups of bacteria and fungi in soil. Primers were thoroughly tested for specificity, and the method was applied to three distinct soils. The technique provides a rapid and robust index of microbial community structure.
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              Meta-analyses of human gut microbes associated with obesity and IBD.

              Recent studies have linked human gut microbes to obesity and inflammatory bowel disease, but consistent signals have been difficult to identify. Here we test for indicator taxa and general features of the microbiota that are generally consistent across studies of obesity and of IBD, focusing on studies involving high-throughput sequencing of the 16S rRNA gene (which we could process using a common computational pipeline). We find that IBD has a consistent signature across studies and allows high classification accuracy of IBD from non-IBD subjects, but that although subjects can be classified as lean or obese within each individual study with statistically significant accuracy, consistent with the ability of the microbiota to experimentally transfer this phenotype, signatures of obesity are not consistent between studies even when the data are analyzed with consistent methods. The results suggest that correlations between microbes and clinical conditions with different effect sizes (e.g. the large effect size of IBD versus the small effect size of obesity) may require different cohort selection and analysis strategies.
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                Author and article information

                Contributors
                Journal
                PeerJ
                PeerJ
                peerj
                peerj
                PeerJ
                PeerJ Inc. (San Francisco, USA )
                2167-8359
                20 June 2017
                2017
                : 5
                : e3443
                Affiliations
                [1 ]Department of Chemical and Bioprocess Engineering, Pontificia Universidad Católica de Chile , Santiago, Chile
                [2 ]Department of Digestive Surgery, School of Medicine, Pontificia Universidad Católica de Chile , Santiago, Chile
                [3 ]Department of Surgery, Faculty of Medicine, Universidad de Los Andes , Santiago, Chile
                Article
                3443
                10.7717/peerj.3443
                5480389
                28649469
                ff70daa1-6fa1-4b25-926d-8f5eadf8b766
                ©2017 Medina et al.

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.

                History
                : 24 February 2017
                : 18 May 2017
                Funding
                Funded by: Proyecto Interdisciplina UC
                Award ID: 10/2013
                Funded by: Fondecyt Postdoctorado
                Award ID: 3160525
                Funded by: Fondecyt de Iniciacion
                Award ID: 11130518
                This work was supported by Proyecto Interdisciplina UC No 10/2013, Fondecyt Postdoctorado [3160525] and Fondecyt de Iniciacion [11130518]. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Genomics
                Microbiology
                Gastroenterology and Hepatology
                Surgery and Surgical Specialties

                human gut microbiota,gastric bypass,sleeve gastrectomy,bariatric surgery

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