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      Evolution of male pregnancy associated with remodeling of canonical vertebrate immunity in seahorses and pipefishes

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          Among vertebrates, pregnancy has evolved more than 150 times independently. A fundamental problem for pregnancy to evolve is inadvertent rejection of the embryo when being recognized as foreign tissue by the vertebrate’s adaptive immune system. We show that the unique evolution of male pregnancy in pipefishes and seahorses coincided with a genomic modification of one arm of the adaptive immune system. Our findings indicate a trade-off between immunological tolerance and embryo rejection to accompanying the emergence of male pregnancy. That syngnathids survive in an ocean of microbes despite their drastically modified immune defense suggests an unexpected immunological flexibility. Our results may improve the understanding of immune-deficiency diseases and call for a reassessment of vertebrate immunity.

          Abstract

          A fundamental problem for the evolution of pregnancy, the most specialized form of parental investment among vertebrates, is the rejection of the nonself-embryo. Mammals achieve immunological tolerance by down-regulating both major histocompatibility complex pathways (MHC I and II). Although pregnancy has evolved multiple times independently among vertebrates, knowledge of associated immune system adjustments is restricted to mammals. All of them (except monotremata) display full internal pregnancy, making evolutionary reconstructions within the class mammalia meaningless. Here, we study the seahorse and pipefish family (syngnathids) that have evolved male pregnancy across a gradient from external oviparity to internal gestation. We assess how immunological tolerance is achieved by reconstruction of the immune gene repertoire in a comprehensive sample of 12 seahorse and pipefish genomes along the “male pregnancy” gradient together with expression patterns of key immune and pregnancy genes in reproductive tissues. We found that the evolution of pregnancy coincided with a modification of the adaptive immune system. Divergent genomic rearrangements of the MHC II pathway among fully pregnant species were identified in both genera of the syngnathids: The pipefishes ( Syngnathus) displayed loss of several genes of the MHC II pathway while seahorses ( Hippocampus) featured a highly divergent invariant chain ( CD74). Our findings suggest that a trade-off between immunological tolerance and embryo rejection accompanied the evolution of unique male pregnancy. That pipefishes survive in an ocean of microbes without one arm of the adaptive immune defense suggests a high degree of immunological flexibility among vertebrates, which may advance our understanding of immune-deficiency diseases.

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          The genome sequence of Atlantic cod reveals a unique immune system.

          Atlantic cod (Gadus morhua) is a large, cold-adapted teleost that sustains long-standing commercial fisheries and incipient aquaculture. Here we present the genome sequence of Atlantic cod, showing evidence for complex thermal adaptations in its haemoglobin gene cluster and an unusual immune architecture compared to other sequenced vertebrates. The genome assembly was obtained exclusively by 454 sequencing of shotgun and paired-end libraries, and automated annotation identified 22,154 genes. The major histocompatibility complex (MHC) II is a conserved feature of the adaptive immune system of jawed vertebrates, but we show that Atlantic cod has lost the genes for MHC II, CD4 and invariant chain (Ii) that are essential for the function of this pathway. Nevertheless, Atlantic cod is not exceptionally susceptible to disease under natural conditions. We find a highly expanded number of MHC I genes and a unique composition of its Toll-like receptor (TLR) families. This indicates how the Atlantic cod immune system has evolved compensatory mechanisms in both adaptive and innate immunity in the absence of MHC II. These observations affect fundamental assumptions about the evolution of the adaptive immune system and its components in vertebrates.
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            Origin and evolution of the adaptive immune system: genetic events and selective pressures.

            The adaptive immune system (AIS) in mammals, which is centred on lymphocytes bearing antigen receptors that are generated by somatic recombination, arose approximately 500 million years ago in jawed fish. This intricate defence system consists of many molecules, mechanisms and tissues that are not present in jawless vertebrates. Two macroevolutionary events are believed to have contributed to the genesis of the AIS: the emergence of the recombination-activating gene (RAG) transposon, and two rounds of whole-genome duplication. It has recently been discovered that a non-RAG-based AIS with similarities to the jawed vertebrate AIS - including two lymphoid cell lineages - arose in jawless fish by convergent evolution. We offer insights into the latest advances in this field and speculate on the selective pressures that led to the emergence and maintenance of the AIS.
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              Combinations of Maternal KIR and Fetal HLA-C Genes Influence the Risk of Preeclampsia and Reproductive Success

              Preeclampsia is a serious complication of pregnancy in which the fetus receives an inadequate supply of blood due to failure of trophoblast invasion. There is evidence that the condition has an immunological basis. The only known polymorphic histocompatibility antigens on the fetal trophoblast are HLA-C molecules. We tested the idea that recognition of these molecules by killer immunoglobulin receptors (KIRs) on maternal decidual NK cells is a key factor in the development of preeclampsia. Striking differences were observed when these polymorphic ligand: receptor pairs were considered in combination. Mothers lacking most or all activating KIR (AA genotype) when the fetus possessed HLA-C belonging to the HLA-C2 group were at a greatly increased risk of preeclampsia. This was true even if the mother herself also had HLA-C2, indicating that neither nonself nor missing-self discrimination was operative. Thus, this interaction between maternal KIR and trophoblast appears not to have an immune function, but instead plays a physiological role related to placental development. Different human populations have a reciprocal relationship between AA frequency and HLA-C2 frequency, suggesting selection against this combination. In light of our findings, reproductive success may have been a factor in the evolution and maintenance of human HLA-C and KIR polymorphisms.
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                Author and article information

                Journal
                Proc Natl Acad Sci U S A
                Proc. Natl. Acad. Sci. U.S.A
                pnas
                pnas
                PNAS
                Proceedings of the National Academy of Sciences of the United States of America
                National Academy of Sciences
                0027-8424
                1091-6490
                28 April 2020
                13 April 2020
                13 April 2020
                : 117
                : 17
                : 9431-9439
                Affiliations
                [1] aMarine Evolutionary Ecology, GEOMAR Helmholtz Centre for Ocean Research Kiel , D-24105 Kiel, Germany;
                [2] bCentre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo , NO-0371 Oslo, Norway;
                [3] cDepartment of Palaeontology and Museum, University of Zurich , CH-8006 Zürich, Switzerland;
                [4] dThünen Institute of Fisheries Ecology , D-27572 Bremerhaven, Germany
                Author notes
                1To whom correspondence may be addressed. Email: oroth@ 123456geomar.de .

                Edited by Günter P. Wagner, Yale University, New Haven, CT, and approved March 13, 2020 (received for review September 18, 2019)

                Author contributions: O.R. and T.B.H.R. initiated and planned the study; S.J. coordinated the sequencing and the comparative genomics; O.K.T. assembled and annotated the genomes and analyzed genome size and repetitive elements; M.H.S. did the gene mining and the alignments, with support from O.R., H.T.B., S.N.K.H., M.S.O.B., and T.B.H.R.; M.M. did the phylogenetic analyses; T.B. did the positive selection analyses; O.R., T.B., and D.H. did the transcriptomics; R.H. provided samples for the genomes; O.R., M.H.S., T.B., T.B.H.R., and S.J. interpreted the data; O.R. wrote the manuscript and made the revisions, with support from all authors.

                2T.B.H.R. and S.J. contributed equally to this work.

                Author information
                http://orcid.org/0000-0002-7349-7797
                http://orcid.org/0000-0002-9677-403X
                http://orcid.org/0000-0002-1932-8212
                http://orcid.org/0000-0003-4741-3884
                http://orcid.org/0000-0001-8601-2122
                http://orcid.org/0000-0002-8961-4337
                http://orcid.org/0000-0001-8707-531X
                Article
                201916251
                10.1073/pnas.1916251117
                7196912
                32284407
                fb21fc82-b4cd-4cc5-82fa-07ef968344ae
                Copyright © 2020 the Author(s). Published by PNAS.

                This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND).

                History
                Page count
                Pages: 9
                Funding
                Funded by: German Research Foundation (DFG)
                Award ID: 349393951
                Award Recipient : Olivia Roth
                Funded by: European Research Council
                Award ID: 755659
                Award Recipient : Olivia Roth
                Funded by: German Research Foundation (DFG)
                Award ID: 237263721
                Award Recipient : Olivia Roth
                Categories
                Biological Sciences
                Evolution

                immunological tolerance,major histocompatibility complex,male pregnancy,seahorse,comparative genomics

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