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      Toward image-based personalization of glioblastoma therapy: A clinical and biological validation study of a novel, deep learning-driven tumor growth model

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          Abstract

          Background

          The diffuse growth pattern of glioblastoma is one of the main challenges for accurate treatment. Computational tumor growth modeling has emerged as a promising tool to guide personalized therapy. Here, we performed clinical and biological validation of a novel growth model, aiming to close the gap between the experimental state and clinical implementation.

          Methods

          One hundred and twenty-four patients from The Cancer Genome Archive (TCGA) and 397 patients from the UCSF Glioma Dataset were assessed for significant correlations between clinical data, genetic pathway activation maps (generated with PARADIGM; TCGA only), and infiltration ( D w) as well as proliferation (ρ) parameters stemming from a Fisher–Kolmogorov growth model. To further evaluate clinical potential, we performed the same growth modeling on preoperative magnetic resonance imaging data from 30 patients of our institution and compared model-derived tumor volume and recurrence coverage with standard radiotherapy plans.

          Results

          The parameter ratio D w/ρ ( P < .05 in TCGA) as well as the simulated tumor volume ( P < .05 in TCGA/UCSF) were significantly inversely correlated with overall survival. Interestingly, we found a significant correlation between 11 proliferation pathways and the estimated proliferation parameter. Depending on the cutoff value for tumor cell density, we observed a significant improvement in recurrence coverage without significantly increased radiation volume utilizing model-derived target volumes instead of standard radiation plans.

          Conclusions

          Identifying a significant correlation between computed growth parameters and clinical and biological data, we highlight the potential of tumor growth modeling for individualized therapy of glioblastoma. This might improve the accuracy of radiation planning in the near future.

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          Most cited references46

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          The 2021 WHO Classification of Tumors of the Central Nervous System: a summary

          The fifth edition of the WHO Classification of Tumors of the Central Nervous System (CNS), published in 2021, is the sixth version of the international standard for the classification of brain and spinal cord tumors. Building on the 2016 updated fourth edition and the work of the Consortium to Inform Molecular and Practical Approaches to CNS Tumor Taxonomy, the 2021 fifth edition introduces major changes that advance the role of molecular diagnostics in CNS tumor classification. At the same time, it remains wedded to other established approaches to tumor diagnosis such as histology and immunohistochemistry. In doing so, the fifth edition establishes some different approaches to both CNS tumor nomenclature and grading and it emphasizes the importance of integrated diagnoses and layered reports. New tumor types and subtypes are introduced, some based on novel diagnostic technologies such as DNA methylome profiling. The present review summarizes the major general changes in the 2021 fifth edition classification and the specific changes in each taxonomic category. It is hoped that this summary provides an overview to facilitate more in-depth exploration of the entire fifth edition of the WHO Classification of Tumors of the Central Nervous System.
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            Comprehensive genomic characterization defines human glioblastoma genes and core pathways

            (2008)
            Human cancer cells typically harbor multiple chromosomal aberrations, nucleotide substitutions and epigenetic modifications that drive malignant transformation. The Cancer Genome Atlas (TCGA) pilot project aims to assess the value of large-scale multidimensional analysis of these molecular characteristics in human cancer and to provide the data rapidly to the research community. Here, we report the interim integrative analysis of DNA copy number, gene expression and DNA methylation aberrations in 206 glioblastomas (GBM), the most common type of adult brain cancer, and nucleotide sequence aberrations in 91 of the 206 GBMs. This analysis provides new insights into the roles of ERBB2, NF1 and TP53, uncovers frequent mutations of the PI3 kinase regulatory subunit gene PIK3R1, and provides a network view of the pathways altered in the development of GBM. Furthermore, integration of mutation, DNA methylation and clinical treatment data reveals a link between MGMT promoter methylation and a hypermutator phenotype consequent to mismatch repair deficiency in treated glioblastomas, an observation with potential clinical implications. Together, these findings establish the feasibility and power of TCGA, demonstrating that it can rapidly expand knowledge of the molecular basis of cancer.
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              Advancing The Cancer Genome Atlas glioma MRI collections with expert segmentation labels and radiomic features

              Gliomas belong to a group of central nervous system tumors, and consist of various sub-regions. Gold standard labeling of these sub-regions in radiographic imaging is essential for both clinical and computational studies, including radiomic and radiogenomic analyses. Towards this end, we release segmentation labels and radiomic features for all pre-operative multimodal magnetic resonance imaging (MRI) (n=243) of the multi-institutional glioma collections of The Cancer Genome Atlas (TCGA), publicly available in The Cancer Imaging Archive (TCIA). Pre-operative scans were identified in both glioblastoma (TCGA-GBM, n=135) and low-grade-glioma (TCGA-LGG, n=108) collections via radiological assessment. The glioma sub-region labels were produced by an automated state-of-the-art method and manually revised by an expert board-certified neuroradiologist. An extensive panel of radiomic features was extracted based on the manually-revised labels. This set of labels and features should enable i) direct utilization of the TCGA/TCIA glioma collections towards repeatable, reproducible and comparative quantitative studies leading to new predictive, prognostic, and diagnostic assessments, as well as ii) performance evaluation of computer-aided segmentation methods, and comparison to our state-of-the-art method.
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                Author and article information

                Contributors
                Journal
                Neurooncol Adv
                Neurooncol Adv
                noa
                Neuro-Oncology Advances
                Oxford University Press (US )
                2632-2498
                Jan-Dec 2024
                27 December 2023
                27 December 2023
                : 6
                : 1
                : vdad171
                Affiliations
                Department of Diagnostic and Interventional Neuroradiology, Technical University of Munich , Munich, Germany
                Department of Informatics, Technical University of Munich , Munich, Germany
                TranslaTUM—Central Institute for Translational Cancer Research, Technical University of Munich , Munich, Germany
                Department of Radiation Oncology, Technical University of Munich , Munich, Germany
                Department of Radiation Sciences (DRS), Institute of Radiation Medicine (IRM), Helmholtz Zentrum München , Munich, Germany
                Deutsches Konsortium für Translationale Krebsforschung (DKTK), Partner Site Munich , Munich, Germany
                Department of Radiation Oncology, Technical University of Munich , Munich, Germany
                Department of Pathology and Molecular Medicine, University of California, Irvine , Irvine, CA, USA
                Department of Diagnostic and Interventional Neuroradiology, Technical University of Munich , Munich, Germany
                Department of Informatics, Technical University of Munich , Munich, Germany
                Helmholtz Artificial Intelligence Cooperation Unit, Helmholtz Zentrum Munich , Munich, Germany
                TranslaTUM—Central Institute for Translational Cancer Research, Technical University of Munich , Munich, Germany
                Department of Informatics, Technical University of Munich , Munich, Germany
                Department of Neuropathology, Institute of Pathology, Technical University of Munich , Munich, Germany
                Department of Radiation Oncology, Technical University of Munich , Munich, Germany
                Department of Radiation Oncology, Technical University of Munich , Munich, Germany
                Department of Radiation Sciences (DRS), Institute of Radiation Medicine (IRM), Helmholtz Zentrum München , Munich, Germany
                Deutsches Konsortium für Translationale Krebsforschung (DKTK), Partner Site Munich , Munich, Germany
                Department of Neurology, Technical University of Munich , Munich, Germany
                Department of Neurosurgery, Technical University of Munich , Munich, Germany
                Department of Neurosurgery, University Medical Center Hamburg-Eppendorf , Hamburg, Germany
                Department of Radiation Oncology, Technical University of Munich , Munich, Germany
                Department of Radiation Sciences (DRS), Institute of Radiation Medicine (IRM), Helmholtz Zentrum München , Munich, Germany
                Deutsches Konsortium für Translationale Krebsforschung (DKTK), Partner Site Munich , Munich, Germany
                Department of Diagnostic and Interventional Neuroradiology, Technical University of Munich , Munich, Germany
                Department of Informatics, Technical University of Munich , Munich, Germany
                Department of Quantitative Biomedicine, University of Zurich , Zurich, Switzerland
                Department of Diagnostic and Interventional Neuroradiology, Technical University of Munich , Munich, Germany
                Author notes
                Corresponding Author: Marie-Christin Metz, MD, Department of Diagnostic and Interventional Neuroradiology, Klinikum rechts der Isar, Technical University of Munich, Ismaninger Str. 22, 81675 Munich, Germany ( marie.metz@ 123456tum.de ).

                Bjoern Menze and Benedikt Wiestler senior authors contributed equally.

                Marie-Christin Metz and Ivan Ezhov contributed equally to this work.

                Author information
                https://orcid.org/0000-0002-1459-5741
                https://orcid.org/0000-0003-4123-4690
                https://orcid.org/0000-0002-2963-7772
                Article
                vdad171
                10.1093/noajnl/vdad171
                10907005
                38435962
                facfffd1-dba7-4c69-89c0-8e6372e27d03
                © The Author(s) 2023. Published by Oxford University Press, the Society for Neuro-Oncology and the European Association of Neuro-Oncology.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License ( https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

                History
                : 01 March 2024
                Page count
                Pages: 10
                Funding
                Funded by: German Research Foundation, DOI 10.13039/501100001659;
                Funded by: Collaborative Research Center;
                Funded by: TUM International Graduate School of Science and Engineering, DOI 10.13039/501100018930;
                Funded by: Institute for Advanced Studies;
                Funded by: Translational Brain Imaging Training Network;
                Award ID: 765148
                Award ID: 956201
                Funded by: Helmut Horten Foundation, DOI 10.13039/501100013850;
                Categories
                Basic and Translational Investigations
                AcademicSubjects/MED00300
                AcademicSubjects/MED00310

                glioblastoma,tumor growth modeling,personalized therapy,deep learning

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