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      Multiscale patterns and drivers of arbuscular mycorrhizal fungal communities in the roots and root‐associated soil of a wild perennial herb

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          Summary

          • Arbuscular mycorrhizal (AM) fungi form diverse communities and are known to influence above‐ground community dynamics and biodiversity. However, the multiscale patterns and drivers of AM fungal composition and diversity are still poorly understood.

          • We sequenced DNA markers from roots and root‐associated soil from Plantago lanceolata plants collected across multiple spatial scales to allow comparison of AM fungal communities among neighbouring plants, plant subpopulations, nearby plant populations, and regions. We also measured soil nutrients, temperature, humidity, and community composition of neighbouring plants and nonAM root‐associated fungi.

          • AM fungal communities were already highly dissimilar among neighbouring plants ( c. 30 cm apart), albeit with a high variation in the degree of similarity at this small spatial scale. AM fungal communities were increasingly, and more consistently, dissimilar at larger spatial scales. Spatial structure and environmental drivers explained a similar percentage of the variation, from 7% to 25%. A large fraction of the variation remained unexplained, which may be a result of unmeasured environmental variables, species interactions and stochastic processes.

          • We conclude that AM fungal communities are highly variable among nearby plants. AM fungi may therefore play a major role in maintaining small‐scale variation in community dynamics and biodiversity.

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          See also the Commentary on this article by https://doi.org/10.1111/nph.15212.

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          Most cited references61

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          AMPLIFICATION AND DIRECT SEQUENCING OF FUNGAL RIBOSOMAL RNA GENES FOR PHYLOGENETICS

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            Patterns and processes of microbial community assembly.

            Recent research has expanded our understanding of microbial community assembly. However, the field of community ecology is inaccessible to many microbial ecologists because of inconsistent and often confusing terminology as well as unnecessarily polarizing debates. Thus, we review recent literature on microbial community assembly, using the framework of Vellend (Q. Rev. Biol. 85:183-206, 2010) in an effort to synthesize and unify these contributions. We begin by discussing patterns in microbial biogeography and then describe four basic processes (diversification, dispersal, selection, and drift) that contribute to community assembly. We also discuss different combinations of these processes and where and when they may be most important for shaping microbial communities. The spatial and temporal scales of microbial community assembly are also discussed in relation to assembly processes. Throughout this review paper, we highlight differences between microbes and macroorganisms and generate hypotheses describing how these differences may be important for community assembly. We end by discussing the implications of microbial assembly processes for ecosystem function and biodiversity.
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              The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota).

              • Here, we describe a new database, MaarjAM, that summarizes publicly available Glomeromycota DNA sequence data and associated metadata. The goal of the database is to facilitate the description of distribution and richness patterns in this group of fungi. • Small subunit (SSU) rRNA gene sequences and available metadata were collated from all suitable taxonomic and ecological publications. These data have been made accessible in an open-access database (http://maarjam.botany.ut.ee). • Two hundred and eighty-two SSU rRNA gene virtual taxa (VT) were described based on a comprehensive phylogenetic analysis of all collated Glomeromycota sequences. Two-thirds of VT showed limited distribution ranges, occurring in single current or historic continents or climatic zones. Those VT that associated with a taxonomically wide range of host plants also tended to have a wide geographical distribution, and vice versa. No relationships were detected between VT richness and latitude, elevation or vascular plant richness. • The collated Glomeromycota molecular diversity data suggest limited distribution ranges in most Glomeromycota taxa and a positive relationship between the width of a taxon's geographical range and its host taxonomic range. Inconsistencies between molecular and traditional taxonomy of Glomeromycota, and shortage of data from major continents and ecosystems, are highlighted.
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                Author and article information

                Contributors
                pil.rasmussen@su.se
                Journal
                New Phytol
                New Phytol
                10.1111/(ISSN)1469-8137
                NPH
                The New Phytologist
                John Wiley and Sons Inc. (Hoboken )
                0028-646X
                1469-8137
                24 March 2018
                December 2018
                : 220
                : 4 , Cross‐scale integration of mycorrhizal function ( doiID: 10.1111/nph.2018.220.issue-4 )
                : 1248-1261
                Affiliations
                [ 1 ] Department of Ecology Environment and Plant Sciences Stockholm University SE‐106 91 Stockholm Sweden
                [ 2 ] School of Biotechnology Science for Life Laboratory KTH Royal Institute of Technology PO Box 1031 SE‐171 21 Solna Sweden
                [ 3 ] Centre for Translational Microbiome Research Department of Molecular, Tumor and Cell Biology Science for Life Laboratory Karolinska Institutet 171 65 Solna Sweden
                [ 4 ] Département de Biologie Faculté des Sciences Université de Sherbrooke 2500 Boulevard Université Sherbrooke QC J1K 2R1 Canada
                [ 5 ] Department of Soil and Environment Swedish University of Agricultural Sciences Box 7014 SE‐750 07 Uppsala Sweden
                Author notes
                [*] [* ] Author for correspondence:

                Pil U. Rasmussen

                Tel: +46 737328012

                Email: pil.rasmussen@ 123456su.se

                Author information
                http://orcid.org/0000-0003-0607-4230
                http://orcid.org/0000-0002-3550-1070
                Article
                NPH15088 2017-25971
                10.1111/nph.15088
                6282561
                29573431
                f81954d0-9636-4878-8df1-df2663ff7352
                © 2018 The Authors. New Phytologist © 2018 New Phytologist Trust

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 12 December 2017
                : 11 February 2018
                Page count
                Figures: 5, Tables: 2, Pages: 14, Words: 11008
                Funding
                Funded by: Biotieteiden ja Ympäristön Tutkimuksen Toimikunta
                Award ID: 265761
                Funded by: Maj ja Tor Nesslingin Säätiö
                Award ID: 2014211
                Funded by: Vetenskapsrådet
                Award ID: 2015‐03993
                Categories
                Full Paper
                Research
                Full Papers
                Custom metadata
                2.0
                nph15088
                December 2018
                Converter:WILEY_ML3GV2_TO_NLMPMC version:version=5.5.3 mode:remove_FC converted:06.12.2018

                Plant science & Botany
                arbuscular mycorrhizal (am) fungi,community composition,fungal community,moran's eigenvector maps,plant community,soil microbial community,spatial structure

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