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      Integrated transcriptomic and proteomic analyses of P. falciparum gametocytes: molecular insight into sex-specific processes and translational repression

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          Abstract

          Sexual differentiation of malaria parasites into gametocytes in the vertebrate host and subsequent gamete fertilization in mosquitoes is essential for the spreading of the disease. The molecular processes orchestrating these transitions are far from fully understood. Here, we report the first transcriptome analysis of male and female Plasmodium falciparum gametocytes coupled with a comprehensive proteome analysis. In male gametocytes there is an enrichment of proteins involved in the formation of flagellated gametes; proteins involved in DNA replication, chromatin organization and axoneme formation. On the other hand, female gametocytes are enriched in proteins required for zygote formation and functions after fertilization; protein-, lipid- and energy-metabolism. Integration of transcriptome and proteome data revealed 512 highly expressed maternal transcripts without corresponding protein expression indicating large scale translational repression in P. falciparum female gametocytes for the first time. Despite a high degree of conservation between Plasmodium species, 260 of these ‘repressed transcripts’ have not been previously described. Moreover, for some of these genes, protein expression is only reported in oocysts and sporozoites indicating that repressed transcripts can be partitioned into short- and long-term storage. Finally, these data sets provide an essential resource for identification of vaccine/drug targets and for further mechanistic studies.

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          Most cited references61

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          Epidemiology and infectivity of Plasmodium falciparum and Plasmodium vivax gametocytes in relation to malaria control and elimination.

          Malaria remains a major cause of morbidity and mortality in the tropics, with Plasmodium falciparum responsible for the majority of the disease burden and P. vivax being the geographically most widely distributed cause of malaria. Gametocytes are the sexual-stage parasites that infect Anopheles mosquitoes and mediate the onward transmission of the disease. Gametocytes are poorly studied despite this crucial role, but with a recent resurgence of interest in malaria elimination, the study of gametocytes is in vogue. This review highlights the current state of knowledge with regard to the development and longevity of P. falciparum and P. vivax gametocytes in the human host and the factors influencing their distribution within endemic populations. The evidence for immune responses, antimalarial drugs, and drug resistance influencing infectiousness to mosquitoes is reviewed. We discuss how the application of molecular techniques has led to the identification of submicroscopic gametocyte carriage and to a reassessment of the human infectious reservoir. These components are drawn together to show how control measures that aim to reduce malaria transmission, such as mass drug administration and a transmission-blocking vaccine, might better be deployed.
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            A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses.

            Plasmodium berghei and Plasmodium chabaudi are widely used model malaria species. Comparison of their genomes, integrated with proteomic and microarray data, with the genomes of Plasmodium falciparum and Plasmodium yoelii revealed a conserved core of 4500 Plasmodium genes in the central regions of the 14 chromosomes and highlighted genes evolving rapidly because of stage-specific selective pressures. Four strategies for gene expression are apparent during the parasites' life cycle: (i) housekeeping; (ii) host-related; (iii) strategy-specific related to invasion, asexual replication, and sexual development; and (iv) stage-specific. We observed posttranscriptional gene silencing through translational repression of messenger RNA during sexual development, and a 47-base 3' untranslated region motif is implicated in this process.
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              Regulation of sexual development of Plasmodium by translational repression.

              G Mair (2006)
              Translational repression of messenger RNAs (mRNAs) plays an important role in sexual differentiation and gametogenesis in multicellular eukaryotes. Translational repression and mRNA turnover were shown to influence stage-specific gene expression in the protozoan Plasmodium. The DDX6-class RNA helicase, DOZI (development of zygote inhibited), is found in a complex with mRNA species in cytoplasmic bodies of female, blood-stage gametocytes. These translationally repressed complexes are normally stored for translation after fertilization. Genetic disruption of pbdozi inhibits the formation of the ribonucleoprotein complexes, and instead, at least 370 transcripts are diverted to a degradation pathway.
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                Author and article information

                Journal
                Nucleic Acids Res
                Nucleic Acids Res
                nar
                nar
                Nucleic Acids Research
                Oxford University Press
                0305-1048
                1362-4962
                27 July 2016
                13 June 2016
                13 June 2016
                : 44
                : 13
                : 6087-6101
                Affiliations
                [1 ]School of Biomedical and Healthcare Sciences, Plymouth University, Plymouth PL4 8AA, UK
                [2 ]Parasitology, Department of Medical Microbiology, Radboud University Medical Centre, 6525 GA Nijmegen, The Netherlands
                [3 ]Malaria Epigenomics Group, Department of Molecular Biology, Radboud University, 6525 GA Nijmegen, The Netherlands
                [4 ]Flow Cytometry Facility, Department of Laboratory Medicine, Radboud University Medical Centre, 6525 GA Nijmegen, The Netherlands
                [5 ]Parasitology, Department of Infectious Diseases, University of Heidelberg Medical School, D-69120 Heidelberg, Germany
                [6 ]Leiden Malaria Research Group, Department of Parasitology, Leiden University Medical Centre, 2300 RC Leiden, The Netherlands
                Author notes
                [* ]To whom correspondence should be addressed. Tel: +44 1752 584461; Email: edwin.lasonder@ 123456plymouth.ac.uk
                Correspondence may also be addressed to Richárd Bártfai. Tel: +31 24 3610561; Email: r.bartfai@ 123456science.ru.nl
                Correspondence may also be addressed to Robert W. Sauerwein. Tel: +31 24 3614306; Email: Robert.Sauerwein@ 123456radboudumc.nl
                []These authors contributed equally to this paper as the first authors.
                [# ]shared senior authors.
                Author information
                http://orcid.org/0000-0003-2582-3444
                Article
                10.1093/nar/gkw536
                5291273
                27298255
                f7457df7-3cc6-438b-ba5c-b12009fee538
                © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@ 123456oup.com

                History
                : 06 June 2016
                : 04 June 2016
                : 10 February 2016
                Page count
                Pages: 15
                Categories
                7
                Data Resources and Analyses
                Custom metadata
                27 July 2016

                Genetics
                Genetics

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