0
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Assignment of the slowly exchanging substrate water of nature’s water-splitting cofactor

      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Significance

          Photosynthesis—the biological process via which solar energy is stored in the form of energy-rich molecules—fuels life on Earth and provides the molecular oxygen we breathe. The crucial starting point for this reaction is the splitting of water, which is carried out by a unique catalyst in Photosystem II. Unraveling the details of this reaction provides the blueprint for how to extract protons and electrons from water using abundant and cheap metal catalysts—a pre-requisite for the sustainable production of green fuels and chemicals. In this study, we identify a key feature of nature’s water-splitting unit, the binding site of one of the two water molecules involved in making O 2.

          Abstract

          Identifying the two substrate water sites of nature’s water-splitting cofactor (Mn 4CaO 5 cluster) provides important information toward resolving the mechanism of O-O bond formation in Photosystem II (PSII). To this end, we have performed parallel substrate water exchange experiments in the S 1 state of native Ca-PSII and biosynthetically substituted Sr-PSII employing Time-Resolved Membrane Inlet Mass Spectrometry (TR-MIMS) and a Time-Resolved 17O-Electron-electron Double resonance detected NMR (TR- 17O-EDNMR) approach. TR-MIMS resolves the kinetics for incorporation of the oxygen-isotope label into the substrate sites after addition of H 2 18O to the medium, while the magnetic resonance technique allows, in principle, the characterization of all exchangeable oxygen ligands of the Mn 4CaO 5 cofactor after mixing with H 2 17O. This unique combination shows i) that the central oxygen bridge (O5) of Ca-PSII core complexes isolated from Thermosynechococcus vestitus has, within experimental conditions, the same rate of exchange as the slowly exchanging substrate water (W S) in the TR-MIMS experiments and ii) that the exchange rates of O5 and W S are both enhanced by Ca 2+→Sr 2+ substitution in a similar manner. In the context of previous TR-MIMS results, this shows that only O5 fulfills all criteria for being W S. This strongly restricts options for the mechanism of water oxidation.

          Related collections

          Most cited references79

          • Record: found
          • Abstract: found
          • Article: not found

          EasySpin, a comprehensive software package for spectral simulation and analysis in EPR.

          EasySpin, a computational package for spectral simulation and analysis in EPR, is described. It is based on Matlab, a commercial technical computation software. EasySpin provides extensive EPR-related functionality, ranging from elementary spin physics to data analysis. In addition, it provides routines for the simulation of liquid- and solid-state EPR and ENDOR spectra. These simulation functions are built on a series of novel algorithms that enhance scope, speed and accuracy of spectral simulations. Spin systems with an arbitrary number of electron and nuclear spins are supported. The structure of the toolbox as well as the theoretical background underlying its simulation functionality are presented, and some illustrative examples are given.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å.

            Photosystem II is the site of photosynthetic water oxidation and contains 20 subunits with a total molecular mass of 350 kDa. The structure of photosystem II has been reported at resolutions from 3.8 to 2.9 Å. These resolutions have provided much information on the arrangement of protein subunits and cofactors but are insufficient to reveal the detailed structure of the catalytic centre of water splitting. Here we report the crystal structure of photosystem II at a resolution of 1.9 Å. From our electron density map, we located all of the metal atoms of the Mn(4)CaO(5) cluster, together with all of their ligands. We found that five oxygen atoms served as oxo bridges linking the five metal atoms, and that four water molecules were bound to the Mn(4)CaO(5) cluster; some of them may therefore serve as substrates for dioxygen formation. We identified more than 1,300 water molecules in each photosystem II monomer. Some of them formed extensive hydrogen-bonding networks that may serve as channels for protons, water or oxygen molecules. The determination of the high-resolution structure of photosystem II will allow us to analyse and understand its functions in great detail. ©2011 Macmillan Publishers Limited. All rights reserved
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Native structure of photosystem II at 1.95 Å resolution viewed by femtosecond X-ray pulses.

              Photosynthesis converts light energy into biologically useful chemical energy vital to life on Earth. The initial reaction of photosynthesis takes place in photosystem II (PSII), a 700-kilodalton homodimeric membrane protein complex that catalyses photo-oxidation of water into dioxygen through an S-state cycle of the oxygen evolving complex (OEC). The structure of PSII has been solved by X-ray diffraction (XRD) at 1.9 ångström resolution, which revealed that the OEC is a Mn4CaO5-cluster coordinated by a well defined protein environment. However, extended X-ray absorption fine structure (EXAFS) studies showed that the manganese cations in the OEC are easily reduced by X-ray irradiation, and slight differences were found in the Mn-Mn distances determined by XRD, EXAFS and theoretical studies. Here we report a 'radiation-damage-free' structure of PSII from Thermosynechococcus vulcanus in the S1 state at a resolution of 1.95 ångströms using femtosecond X-ray pulses of the SPring-8 ångström compact free-electron laser (SACLA) and hundreds of large, highly isomorphous PSII crystals. Compared with the structure from XRD, the OEC in the X-ray free electron laser structure has Mn-Mn distances that are shorter by 0.1-0.2 ångströms. The valences of each manganese atom were tentatively assigned as Mn1D(III), Mn2C(IV), Mn3B(IV) and Mn4A(III), based on the average Mn-ligand distances and analysis of the Jahn-Teller axis on Mn(III). One of the oxo-bridged oxygens, O5, has significantly longer distances to Mn than do the other oxo-oxygen atoms, suggesting that O5 is a hydroxide ion instead of a normal oxygen dianion and therefore may serve as one of the substrate oxygen atoms. These findings provide a structural basis for the mechanism of oxygen evolution, and we expect that this structure will provide a blueprint for the design of artificial catalysts for water oxidation.
                Bookmark

                Author and article information

                Contributors
                Journal
                Proc Natl Acad Sci U S A
                Proc Natl Acad Sci U S A
                PNAS
                Proceedings of the National Academy of Sciences of the United States of America
                National Academy of Sciences
                0027-8424
                1091-6490
                4 March 2024
                12 March 2024
                4 March 2024
                : 121
                : 11
                : e2319374121
                Affiliations
                [1] aDepartment of Chemistry- Ångström Laboratorium, Uppsala University , Uppsala S-75120, Sweden
                [2] bDepartment of Chemistry, Chemical Biological Centre, Umeå University , Umeå S-90187, Sweden
                [3] cMax Planck Institute for Chemical Energy Conversion , Mülheim an der Ruhr D-45470, Germany
                [4] dDepartment of Plant Biochemistry, Ruhr-Universität Bochum , Bochum D-44780, Germany
                [5] eResearch School of Chemistry, Australian National University , Acton ACT 2601, Australia
                Author notes

                Edited by Pierre Joliot, Institut de Biologie Physico-Chimique, Paris, France; received November 6, 2023; accepted February 12, 2024

                1C.d.L. and L.R. contributed equally to this work.

                2Present address: Research School of Chemistry, Australian National University, Acton ACT 2601, Australia.

                3Present address: Institut für Biowissenschaften, Department of Biochemistry, Universität Rostock, Rostock D-18059, Germany.

                Author information
                https://orcid.org/0000-0003-2975-8395
                https://orcid.org/0009-0003-8502-9979
                https://orcid.org/0000-0003-2172-0341
                https://orcid.org/0000-0002-2362-0638
                https://orcid.org/0000-0001-7059-5327
                https://orcid.org/0000-0003-2790-7721
                https://orcid.org/0000-0002-7815-6115
                Article
                202319374
                10.1073/pnas.2319374121
                10945779
                38437550
                f3b4978d-965d-4382-84d1-e56153909250
                Copyright © 2024 the Author(s). Published by PNAS.

                This open access article is distributed under Creative Commons Attribution License 4.0 (CC BY).

                History
                : 06 November 2023
                : 12 February 2024
                Page count
                Pages: 8, Words: 6645
                Funding
                Funded by: Bundesministerium für Bildung und Forschung (BMBF), FundRef 501100002347;
                Award ID: 03EK3545
                Award Recipient : Wolfgang Lubitz
                Funded by: Vetenskapsrådet (VR), FundRef 501100004359;
                Award ID: 2016-05183
                Award Recipient : Johannes Messinger
                Funded by: Vetenskapsrådet (VR), FundRef 501100004359;
                Award ID: 2020-03809
                Award Recipient : Johannes Messinger
                Funded by: Australian Research Council;
                Award ID: DP200100338
                Award Recipient : Nicholas Cox
                Categories
                research-article, Research Article
                biophys-phys, Biophysics and Computational Biology
                0
                Physical Sciences
                Biophysics and Computational Biology

                photosynthesis,photosystem ii,water oxidation mechanism,membrane inlet mass spectrometry (mims),electron paramagnetic resonance (epr)

                Comments

                Comment on this article