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      The Mediator CDK8-Cyclin C complex modulates Dpp signaling in Drosophila by stimulating Mad-dependent transcription

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          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Dysregulation of CDK8 (Cyclin-Dependent Kinase 8) and its regulatory partner CycC (Cyclin C), two subunits of the conserved Mediator (MED) complex, have been linked to diverse human diseases such as cancer. Thus, it is essential to understand the regulatory network modulating the CDK8-CycC complex in both normal development and tumorigenesis. To identify upstream regulators or downstream effectors of CDK8, we performed a dominant modifier genetic screen in Drosophila based on the defects in vein patterning caused by specific depletion or overexpression of CDK8 or CycC in developing wing imaginal discs. We identified 26 genomic loci whose haploinsufficiency can modify these CDK8- or CycC-specific phenotypes. Further analysis of two overlapping deficiency lines and mutant alleles led us to identify genetic interactions between the CDK8-CycC pair and the components of the Decapentaplegic (Dpp, the Drosophila homolog of TGFβ, or Transforming Growth Factor-β) signaling pathway. We observed that CDK8-CycC positively regulates transcription activated by Mad (Mothers against dpp), the primary transcription factor downstream of the Dpp/TGFβ signaling pathway. CDK8 can directly interact with Mad in vitro through the linker region between the DNA-binding MH1 (Mad homology 1) domain and the carboxy terminal MH2 (Mad homology 2) transactivation domain. Besides CDK8 and CycC, further analyses of other subunits of the MED complex have revealed six additional subunits that are required for Mad-dependent transcription in the wing discs: Med12, Med13, Med15, Med23, Med24, and Med31. Furthermore, our analyses confirmed the positive roles of CDK9 and Yorkie in regulating Mad-dependent gene expression in vivo. These results suggest that CDK8 and CycC, together with a few other subunits of the MED complex, may coordinate with other transcription cofactors in regulating Mad-dependent transcription during wing development in Drosophila.

          Author summary

          CDK8 and its dedicated partner CycC are conserved subunits of the Mediator complex that bridges transcription factors with RNA Polymerase II in eukaryotes. Here we explore the function and regulation of the CDK8-CycC pair in Drosophila by performing a dominant modifier genetic screen based on wing vein patterning defects caused by specific alteration of CDK8-CycC activities. We have observed that multiple components of the Dpp/TGFβ signaling pathway genetically interact with CDK8-CycC. CDK8 and CycC positively regulate gene expression activated by Mad, the key transcription factor downstream of Dpp/TGFβ signaling, and CDK8 can directly interact with the linker region of the Mad protein. We also identify additional, but not all, subunits of the Mediator complex that play positive roles in regulating Mad-dependent gene expression. Given the fundamental role of Dpp/TGFβ signaling in regulating development and its misregulation in a variety of diseases, understanding how Mad/Smad interacts with the Mediator complex may have broad implications in understanding the pathogenesis of these diseases.

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          Most cited references77

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          The Mediator complex: a central integrator of transcription.

          The RNA polymerase II (Pol II) enzyme transcribes all protein-coding and most non-coding RNA genes and is globally regulated by Mediator - a large, conformationally flexible protein complex with a variable subunit composition (for example, a four-subunit cyclin-dependent kinase 8 module can reversibly associate with it). These biochemical characteristics are fundamentally important for Mediator's ability to control various processes that are important for transcription, including the organization of chromatin architecture and the regulation of Pol II pre-initiation, initiation, re-initiation, pausing and elongation. Although Mediator exists in all eukaryotes, a variety of Mediator functions seem to be specific to metazoans, which is indicative of more diverse regulatory requirements.
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            The art and design of genetic screens: Drosophila melanogaster.

            The success of Drosophila melanogaster as a model organism is largely due to the power of forward genetic screens to identify the genes that are involved in a biological process. Traditional screens, such as the Nobel-prize-winning screen for embryonic-patterning mutants, can only identify the earliest phenotype of a mutation. This review describes the ingenious approaches that have been devised to circumvent this problem: modifier screens, for example, have been invaluable for elucidating signal-transduction pathways, whereas clonal screens now make it possible to screen for almost any phenotype in any cell at any stage of development.
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              The Berkeley Drosophila Genome Project gene disruption project: Single P-element insertions mutating 25% of vital Drosophila genes.

              A fundamental goal of genetics and functional genomics is to identify and mutate every gene in model organisms such as Drosophila melanogaster. The Berkeley Drosophila Genome Project (BDGP) gene disruption project generates single P-element insertion strains that each mutate unique genomic open reading frames. Such strains strongly facilitate further genetic and molecular studies of the disrupted loci, but it has remained unclear if P elements can be used to mutate all Drosophila genes. We now report that the primary collection has grown to contain 1045 strains that disrupt more than 25% of the estimated 3600 Drosophila genes that are essential for adult viability. Of these P insertions, 67% have been verified by genetic tests to cause the associated recessive mutant phenotypes, and the validity of most of the remaining lines is predicted on statistical grounds. Sequences flanking >920 insertions have been determined to exactly position them in the genome and to identify 376 potentially affected transcripts from collections of EST sequences. Strains in the BDGP collection are available from the Bloomington Stock Center and have already assisted the research community in characterizing >250 Drosophila genes. The likely identity of 131 additional genes in the collection is reported here. Our results show that Drosophila genes have a wide range of sensitivity to inactivation by P elements, and provide a rationale for greatly expanding the BDGP primary collection based entirely on insertion site sequencing. We predict that this approach can bring >85% of all Drosophila open reading frames under experimental control.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: Writing – original draft
                Role: Formal analysisRole: InvestigationRole: MethodologyRole: Writing – review & editing
                Role: Methodology
                Role: Methodology
                Role: Formal analysisRole: Methodology
                Role: Formal analysis
                Role: Formal analysis
                Role: Writing – review & editing
                Role: Funding acquisitionRole: Writing – review & editing
                Role: Writing – review & editing
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: Funding acquisitionRole: InvestigationRole: Project administrationRole: SupervisionRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS Genet
                PLoS Genet
                plos
                plosgen
                PLoS Genetics
                Public Library of Science (San Francisco, CA USA )
                1553-7390
                1553-7404
                28 May 2020
                May 2020
                : 16
                : 5
                : e1008832
                Affiliations
                [1 ] Department of Molecular and Cellular Medicine, College of Medicine, Texas A&M University Health Science Center, Bryan, Texas, United States of America
                [2 ] School of Medicine, Tsinghua University, Beijing, China
                [3 ] Centre de Biologie Intégrative, Centre de Biologie du Développement, UMR5544 du CNRS, Université de Toulouse, Toulouse, France
                [4 ] Department of Nutrition, Texas A&M University, College Station, Texas, United States of America
                University of Colorado Medical School, UNITED STATES
                Author notes

                The authors have declared that no competing interests exist.

                [¤]

                Current address: Femtera Laboratories LLC., Indianapolis, Indiana, United States of America

                Author information
                http://orcid.org/0000-0002-6762-2475
                http://orcid.org/0000-0002-8066-395X
                http://orcid.org/0000-0002-4931-5818
                http://orcid.org/0000-0001-6912-7876
                http://orcid.org/0000-0002-4444-2519
                http://orcid.org/0000-0001-9332-8440
                http://orcid.org/0000-0002-4483-4336
                Article
                PGENETICS-D-19-00832
                10.1371/journal.pgen.1008832
                7282676
                32463833
                f332b4d3-0c28-42a7-8994-f15a41aa7984
                © 2020 Li et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 30 May 2019
                : 5 May 2020
                Page count
                Figures: 9, Tables: 3, Pages: 30
                Funding
                Funded by: National Institute of Health
                Award ID: GM133011
                Award Recipient :
                Funded by: National Institute of Health
                Award ID: GM129266
                Award Recipient :
                Funded by: the “Association contre la Cancer”
                Award ID: ARC
                Award Recipient :
                This work was supported by grants from the National Institute of Health (GM133011 and GM129266 to J.Y.J.) and the “Association contre la Cancer” (ARC, to H.M.B.). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Research and Analysis Methods
                Animal Studies
                Experimental Organism Systems
                Model Organisms
                Drosophila Melanogaster
                Research and Analysis Methods
                Model Organisms
                Drosophila Melanogaster
                Research and Analysis Methods
                Animal Studies
                Experimental Organism Systems
                Animal Models
                Drosophila Melanogaster
                Biology and Life Sciences
                Organisms
                Eukaryota
                Animals
                Invertebrates
                Arthropoda
                Insects
                Drosophila
                Drosophila Melanogaster
                Biology and Life Sciences
                Genetics
                Gene Expression
                Gene Regulation
                Transcriptional Control
                Biology and life sciences
                Cell biology
                Signal transduction
                Cell signaling
                Signaling cascades
                DPP signaling cascade
                Biology and Life Sciences
                Genetics
                Gene Expression
                Biology and Life Sciences
                Genetics
                Gene Types
                Suppressor Genes
                Biology and Life Sciences
                Biochemistry
                Proteins
                Post-Translational Modification
                Phosphorylation
                Biology and Life Sciences
                Genetics
                Gene Expression
                Gene Regulation
                Biology and Life Sciences
                Genetics
                Phenotypes
                Custom metadata
                vor-update-to-uncorrected-proof
                2020-06-09
                All relevant data are within the manuscript and its Supporting Information files.

                Genetics
                Genetics

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