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      Local mitochondrial replication in the periphery of neurons requires the eEF1A1 protein and thetranslation of nuclear-encoded proteins

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          Summary

          In neurons, it is commonly assumed that mitochondrial replication only occurs in the cell body, after which the mitochondria must travel to the neuron’s periphery. However, while mitochondrial DNA replication has been observed to occur away from the cell body, the specific mechanisms involved remain elusive. Using EdU-labelling in mouse primary neurons, we developed a tool to determine the mitochondrial replication rate. Taking of advantage of microfluidic devices, we confirmed that mitochondrial replication also occurs locally in the periphery of neurons. To achieve this, mitochondria require de novo nuclear-encoded, but not mitochondrial-encoded protein translation. Following a proteomic screen comparing synaptic with non-synaptic mitochondria, we identified two elongation factors – eEF1A1 and TUFM – that were upregulated in synaptic mitochondria. We found that mitochondrial replication is impaired upon the downregulation of eEF1A1, and this is particularly relevant in the periphery of neurons.

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          Highlights

          • Mitochondrial replication occurs in distal regions of neurons

          • Mitochondrial-encoded translation is not required for mtDNA replication in neurons

          • In neurons, mitochondrial replication requires nuclear-encoded protein translation

          • EEF1A1 is upregulated at the synapse and is required for mitochondrial replication

          Abstract

          Biochemistry; Biological sciences; Cellular neuroscience; Molecular neuroscience; Natural sciences; Neuroscience

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          Most cited references60

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          Universal sample preparation method for proteome analysis.

          We describe a method, filter-aided sample preparation (FASP), which combines the advantages of in-gel and in-solution digestion for mass spectrometry-based proteomics. We completely solubilized the proteome in sodium dodecyl sulfate, which we then exchanged by urea on a standard filtration device. Peptides eluted after digestion on the filter were pure, allowing single-run analyses of organelles and an unprecedented depth of proteome coverage.
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            Reporting animal research: Explanation and elaboration for the ARRIVE guidelines 2.0

            Improving the reproducibility of biomedical research is a major challenge. Transparent and accurate reporting is vital to this process; it allows readers to assess the reliability of the findings and repeat or build upon the work of other researchers. The ARRIVE guidelines (Animal Research: Reporting In Vivo Experiments) were developed in 2010 to help authors and journals identify the minimum information necessary to report in publications describing in vivo experiments. Despite widespread endorsement by the scientific community, the impact of ARRIVE on the transparency of reporting in animal research publications has been limited. We have revised the ARRIVE guidelines to update them and facilitate their use in practice. The revised guidelines are published alongside this paper. This explanation and elaboration document was developed as part of the revision. It provides further information about each of the 21 items in ARRIVE 2.0, including the rationale and supporting evidence for their inclusion in the guidelines, elaboration of details to report, and examples of good reporting from the published literature. This document also covers advice and best practice in the design and conduct of animal studies to support researchers in improving standards from the start of the experimental design process through to publication.
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              UniProt: a hub for protein information

              UniProt is an important collection of protein sequences and their annotations, which has doubled in size to 80 million sequences during the past year. This growth in sequences has prompted an extension of UniProt accession number space from 6 to 10 characters. An increasing fraction of new sequences are identical to a sequence that already exists in the database with the majority of sequences coming from genome sequencing projects. We have created a new proteome identifier that uniquely identifies a particular assembly of a species and strain or subspecies to help users track the provenance of sequences. We present a new website that has been designed using a user-experience design process. We have introduced an annotation score for all entries in UniProt to represent the relative amount of knowledge known about each protein. These scores will be helpful in identifying which proteins are the best characterized and most informative for comparative analysis. All UniProt data is provided freely and is available on the web at http://www.uniprot.org/.
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                Author and article information

                Contributors
                Journal
                iScience
                iScience
                iScience
                Elsevier
                2589-0042
                05 February 2024
                19 April 2024
                05 February 2024
                : 27
                : 4
                : 109136
                Affiliations
                [1 ]Instituto de Medicina Molecular-João Lobo Antunes, Faculdade de Medicina, Universidade de Lisboa, Lisboa, Portugal
                [2 ]Department of Neurology, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA
                [3 ]VIB Center for Brain and Disease Research and KU Leuven, Department of Neurosciences, Leuven, Belgium
                [4 ]Dementia Research Institute, University College London, London, UK
                [5 ]Neuromuscular Reference Center, Department of Neurology, Centre Hospitalier Universitaire d'Angers, Angers, France
                Author notes
                []Corresponding author vmorais@ 123456medicina.ulisboa.pt
                [6]

                Lead contact

                Article
                S2589-0042(24)00357-2 109136
                10.1016/j.isci.2024.109136
                10951640
                38510136
                f04aef6f-81f3-43e6-84a0-bb93f0ddd5a0
                © 2024 The Authors

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 10 September 2023
                : 19 December 2023
                : 1 February 2024
                Categories
                Article

                biochemistry,biological sciences,cellular neuroscience,molecular neuroscience,natural sciences,neuroscience

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