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      Emerging roles of macrosatellite repeats in genome organization and disease development

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          ABSTRACT

          Abundant repetitive DNA sequences are an enigmatic part of the human genome. Despite increasing evidence on the functionality of DNA repeats, their biologic role is still elusive and under frequent debate. Macrosatellites are the largest of the tandem DNA repeats, located on one or multiple chromosomes. The contribution of macrosatellites to genome regulation and human health was demonstrated for the D4Z4 macrosatellite repeat array on chromosome 4q35. Reduced copy number of D4Z4 repeats is associated with local euchromatinization and the onset of facioscapulohumeral muscular dystrophy. Although the role other macrosatellite families may play remains rather obscure, their diverse functionalities within the genome are being gradually revealed. In this review, we will outline structural and functional features of coding and noncoding macrosatellite repeats, and highlight recent findings that bring these sequences into the spotlight of genome organization and disease development.

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          Most cited references97

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          Gene action in the X-chromosome of the mouse (Mus musculus L.).

          MARY LYON (1961)
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            Selfish genes, the phenotype paradigm and genome evolution.

            Natural selection operating within genomes will inevitably result in the appearance of DNAs with no phenotypic expression whose only 'function' is survival within genomes. Prokaryotic transposable elements and eukaryotic middle-repetitive sequences can be seen as such DNA's and thus no phenotypic or evolutionary function need be assigned to them.
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              Ubiquitous somatic mutations in simple repeated sequences reveal a new mechanism for colonic carcinogenesis.

              Spontaneous errors in DNA replication have been suggested to play a significant role in neoplastic transformation and to explain the chromosomal alterations seen in cancer cells. A defective replication factor could increase the mutation rate in clonal variants arising during tumour progression, but despite intensive efforts, increases in tumour cell mutation rates have not been unambiguously shown. Here we use an unbiased genomic fingerprinting technique to show that 12 per cent of colorectal carcinomas carry somatic deletions in poly(dA.dT) sequences and other simple repeats. We estimate that cells from these tumours can carry more than 100,000 such mutations. Only tumours with affected poly(dA.dT) sequences carry mutations in the other simple repeats examined, and such mutations can be found in all neoplastic regions of multiple tumours from the same patient, including adenomas. Tumours with these mutations show distinctive genotypic and phenotypic features. We conclude that these mutations reflect a previously undescribed form of carcinogenesis in the colon (predisposition to which may be inherited) mediated by a mutation in a DNA replication factor resulting in reduced fidelity for replication or repair (a 'mutator mutation').
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                Author and article information

                Journal
                Epigenetics
                Epigenetics
                KEPI
                kepi20
                Epigenetics
                Taylor & Francis
                1559-2294
                1559-2308
                2017
                20 April 2017
                20 April 2017
                : 12
                : 7
                : 515-526
                Affiliations
                [a ]Program of Predictive and Personalized Medicine of Cancer (PMPPC), Institut d'Investigació en Ciències de la Salut Germans Trias i Pujol (IGTP) , Campus Can Ruti, Badalona, Barcelona, Spain
                [b ]Sanford-Burnham-Prebys Medical Discovery Institute (SBP) , La Jolla, CA, USA
                Author notes
                CONTACT Manuel Perucho mperucho@ 123456igtp.cat
                Article
                1318235
                10.1080/15592294.2017.1318235
                5687341
                28426282
                ef1f6de4-fda1-44c0-b902-6400e3dca89b
                © 2017 The Author(s). Taylor & Francis Group, LLC

                This is an Open Access article distributed under the terms of the Creative Commons Attribution-Non-Commercial License http://creativecommons.org/licenses/by-nc-nd/4.0/, which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The moral rights of the named author(s) have been asserted.

                History
                : 27 February 2017
                : 1 April 2017
                : 6 April 2017
                Page count
                Figures: 4, Tables: 1, Equations: 0, References: 113, Pages: 12
                Categories
                Review

                Genetics
                dna repeats,epigenetics,genome organization,macrosatellite repeats,noncoding genome
                Genetics
                dna repeats, epigenetics, genome organization, macrosatellite repeats, noncoding genome

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