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      Phenogrouping heart failure with preserved or mildly reduced ejection fraction using electronic health record data

      research-article
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      BMC Cardiovascular Disorders
      BioMed Central
      Heart failure with preserved or mildly reduced ejection fraction, Machine learning, Electronic health records

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          Abstract

          Background

          Heart failure (HF) with preserved or mildly reduced ejection fraction includes a heterogenous group of patients. Reclassification into distinct phenogroups to enable targeted interventions is a priority. This study aimed to identify distinct phenogroups, and compare phenogroup characteristics and outcomes, from electronic health record data.

          Methods

          2,187 patients admitted to five UK hospitals with a diagnosis of HF and a left ventricular ejection fraction   40% were identified from the NIHR Health Informatics Collaborative database. Partition-based, model-based, and density-based machine learning clustering techniques were applied. Cox Proportional Hazards and Fine-Gray competing risks models were used to compare outcomes (all-cause mortality and hospitalisation for HF) across phenogroups.

          Results

          Three phenogroups were identified: (1) Younger, predominantly female patients with high prevalence of cardiometabolic and coronary disease; (2) More frail patients, with higher rates of lung disease and atrial fibrillation; (3) Patients characterised by systemic inflammation and high rates of diabetes and renal dysfunction. Survival profiles were distinct, with an increasing risk of all-cause mortality from phenogroups 1 to 3 ( p < 0.001). Phenogroup membership significantly improved survival prediction compared to conventional factors. Phenogroups were not predictive of hospitalisation for HF.

          Conclusions

          Applying unsupervised machine learning to routinely collected electronic health record data identified phenogroups with distinct clinical characteristics and unique survival profiles.

          Supplementary Information

          The online version contains supplementary material available at 10.1186/s12872-024-03987-9.

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          Most cited references24

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          2021 ESC Guidelines for the diagnosis and treatment of acute and chronic heart failure

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            Empagliflozin in Heart Failure with a Preserved Ejection Fraction

            Sodium-glucose cotransporter 2 inhibitors reduce the risk of hospitalization for heart failure in patients with heart failure and a reduced ejection fraction, but their effects in patients with heart failure and a preserved ejection fraction are uncertain.
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              • Article: not found

              MissForest--non-parametric missing value imputation for mixed-type data.

              Modern data acquisition based on high-throughput technology is often facing the problem of missing data. Algorithms commonly used in the analysis of such large-scale data often depend on a complete set. Missing value imputation offers a solution to this problem. However, the majority of available imputation methods are restricted to one type of variable only: continuous or categorical. For mixed-type data, the different types are usually handled separately. Therefore, these methods ignore possible relations between variable types. We propose a non-parametric method which can cope with different types of variables simultaneously. We compare several state of the art methods for the imputation of missing values. We propose and evaluate an iterative imputation method (missForest) based on a random forest. By averaging over many unpruned classification or regression trees, random forest intrinsically constitutes a multiple imputation scheme. Using the built-in out-of-bag error estimates of random forest, we are able to estimate the imputation error without the need of a test set. Evaluation is performed on multiple datasets coming from a diverse selection of biological fields with artificially introduced missing values ranging from 10% to 30%. We show that missForest can successfully handle missing values, particularly in datasets including different types of variables. In our comparative study, missForest outperforms other methods of imputation especially in data settings where complex interactions and non-linear relations are suspected. The out-of-bag imputation error estimates of missForest prove to be adequate in all settings. Additionally, missForest exhibits attractive computational efficiency and can cope with high-dimensional data. The package missForest is freely available from http://stat.ethz.ch/CRAN/. stekhoven@stat.math.ethz.ch; buhlmann@stat.math.ethz.ch
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                Author and article information

                Contributors
                Christopher.Miller@manchester.ac.uk
                Journal
                BMC Cardiovasc Disord
                BMC Cardiovasc Disord
                BMC Cardiovascular Disorders
                BioMed Central (London )
                1471-2261
                5 July 2024
                5 July 2024
                2024
                : 24
                : 343
                Affiliations
                [1 ]GRID grid.5379.8, ISNI 0000000121662407, Division of Cardiovascular Sciences, School of Medical Sciences, Faculty of Biology, Medicine and Health, Manchester Academic Health Science Centre, , University of Manchester, ; Oxford Road, Manchester, M13 9PL UK
                [2 ]GRID grid.498924.a, ISNI 0000 0004 0430 9101, Manchester University NHS Foundation Trust, ; Southmoor Road, Wythenshawe, Manchester, M23 9LT UK
                [3 ]Division of Informatics, Imaging and Data Sciences, School of Health Sciences, Faculty of Biology, Medicine and Health, University of Manchester, ( https://ror.org/027m9bs27) Oxford Road, Manchester, M13 9PL UK
                [4 ]GRID grid.426467.5, ISNI 0000 0001 2108 8951, NIHR Imperial Biomedical Research Centre, , Imperial College London and Imperial College Healthcare NHS Trust, St Mary’s Hospital, ; London, W2 1NY UK
                [5 ]GRID grid.7445.2, ISNI 0000 0001 2113 8111, Imperial Clinical Analytics, Research and Evaluation, Digital Collaboration Space, Faculty of Medicine, , Imperial College London and Paddington Life Sciences, ; London, UK
                [6 ]NIHR Oxford Biomedical Research Centre, University of Oxford and Oxford University Hospitals NHS Foundation Trust, ( https://ror.org/052gg0110) Oxford, UK
                [7 ]GRID grid.52996.31, ISNI 0000 0000 8937 2257, London Biomedical Research Centre, , NIHR University College, University College London and University College London Hospitals NHS Foundation Trust, ; London, UK
                [8 ]NIHR Leeds Clinical Research Facility, Leeds Teaching Hospitals Trust and University of Leeds, ( https://ror.org/024mrxd33) Leeds, UK
                [9 ]GRID grid.498924.a, ISNI 0000 0004 0430 9101, NIHR Manchester Biomedical Research Centre, , Manchester University NHS Foundation Trust, University of Manchester, ; Manchester, UK
                [10 ]NIHR Southampton Clinical Research Facility and Biomedical Research Centre, Faculty of Medicine, University of Southampton and University Hospital Southampton NHS Foundation Trust, ( https://ror.org/0485axj58) Southampton, UK
                [11 ]NIHR Biomedical Research Centre, Glenfield Hospital, ( https://ror.org/048a96r61) Leicester, LE3 9QP UK
                [12 ]GRID grid.410421.2, ISNI 0000 0004 0380 7336, NIHR Bristol Biomedical Research Centre, , University of Bristol and University Hospitals Bristol and Weston NHS Foundation Trust, ; Bristol, UK
                [13 ]GRID grid.429705.d, ISNI 0000 0004 0489 4320, King’s College London British Heart Foundation Centre of Excellence and King’s College Hospital NHS Foundation Trust, ; London, UK
                [14 ]British Heart Foundation Centre of Excellence, School of Cardiovascular Medicine and Sciences, King’s College London, ( https://ror.org/0220mzb33) London, UK
                [15 ]NIHR Biomedical Research Centre, The Royal Marsden and Institute of Cancer Research, ( https://ror.org/014ktry78) London, UK
                [16 ]GRID grid.5379.8, ISNI 0000000121662407, Wellcome Centre for Cell-Matrix Research, Division of Cell-Matrix Biology & Regenerative Medicine, School of Biology, Faculty of Biology, Medicine & Health, Manchester Academic Health Science Centre, , University of Manchester, ; Oxford Road, Manchester, M13 9PT UK
                [17 ]The Healthcare Improvement Studies Institute (THIS Institute), Department of Public Health and Primary Care, University of Cambridge, ( https://ror.org/013meh722) Cambridge, UK
                Article
                3987
                10.1186/s12872-024-03987-9
                11229019
                38969974
                ec0a3d6a-ec34-4ba0-8350-b27f3a40c6c6
                © The Author(s) 2024

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

                History
                : 3 January 2024
                : 19 June 2024
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100013342, NIHR Imperial Biomedical Research Centre;
                Funded by: FundRef http://dx.doi.org/10.13039/501100013373, NIHR Oxford Biomedical Research Centre;
                Funded by: NIHR University College London Biomedical Research Centre
                Funded by: FundRef http://dx.doi.org/10.13039/501100000272, National Institute for Health and Care Research;
                Award ID: AI_AWARD01864
                Award ID: NIHR301338
                Funded by: FundRef http://dx.doi.org/10.13039/100014013, UK Research and Innovation;
                Award ID: Horizon Europe Guarantee for DataTools4Heart
                Funded by: FundRef http://dx.doi.org/10.13039/501100000274, British Heart Foundation;
                Award ID: AA/18/6/24223
                Award ID: FS/CRA/22/23036
                Award ID: AA/18/4/34221
                Funded by: NIHR Leeds Clinical Research Facility
                Funded by: NIHR Manchester Biomedical Research Centre
                Funded by: NIHR Southampton Biomedical Research Centre
                Funded by: FundRef http://dx.doi.org/10.13039/501100020013, NIHR Leicester Biomedical Research Centre;
                Funded by: FundRef http://dx.doi.org/10.13039/100015250, NIHR Bristol Biomedical Research Centre;
                Funded by: British Heart Foundation Centre of Excellence at the School of Cardiovascular Medicine and Sciences, King’s College London
                Funded by: NIHR Biomedical Research Centre at The Royal Marsden and Institute of Cancer Research
                Funded by: BHF Imperial Centre for Research Excellence
                Award ID: RE/18/4/34215
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                © BioMed Central Ltd., part of Springer Nature 2024

                Cardiovascular Medicine
                heart failure with preserved or mildly reduced ejection fraction,machine learning,electronic health records

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