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      How useful is the current species recognition concept for the determination of true morels? Insights from the Czech Republic

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      1 , 1 ,
      MycoKeys
      Pensoft Publishers
      GCPSR, Mel-39, Morchella , multigene analysis, phylospecies, species concept

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          Abstract

          Abstract

          The phylogentic diversity of the genus Morchella has only been sporadically studied in Central Europe. In this study, a molecular taxonomic revision of the Morchella species of the Czech Republic was performed using available fungarium specimens, fresh collections, and axenic cultures. Molecular phylogenetic analyses based on either ITS or five-locus (ITS, LSU, RPB1, RPB2, and EF-1α) sequencing and the application of principles of the genealogical concordance phylogenetic species recognition (GCPSR) have revealed the occurrence of 11 phylogenetic species in the region, but only six of them could be assigned unequivocally to the previously published phylospecies: Mel-3 ( M. semilibera ), Mel-10 ( M. importuna ), Mel-19 ( M. eohespera ), Mes-4 ( M. americana ), Mes-5 and Mes-8 ( M. esculenta ). One lineage was identified as a new phylospecies and is designated as Mel-39. Four lineages grouped together with two or more previously published phylospecies: Mel-13/26 ( M. deliciosa ), Mel-15/16 ( M. angusticeps / M. eximioides ), Mel-20/34 ( M. purpurascens ), and Mel-23/24/31/32 ( M. pulchella ). Our phylogenetic analyses and literature review shed light on the pitfalls of current molecular taxonomy of morels and highlight the ambiguities of present species recognition concepts. The main source of the problems seems to be rooted in the application of different methods (multigene vs single-gene sequencing, phenotypic determination) and approaches (monophyly vs paraphyly, the application or not of GCPSR, degree of differentiation between accepted species, etc.) by various authors for the delimitation of new phylospecies. Therefore, we propose five criteria for distinguishing new phylospecies in the genus Morchella based on molecular data, and recommend a more conservative approach in species delimitation.

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          Phylogenetic species recognition and species concepts in fungi.

          The operational species concept, i.e., the one used to recognize species, is contrasted to the theoretical species concept. A phylogenetic approach to recognize fungal species based on concordance of multiple gene genealogies is compared to those based on morphology and reproductive behavior. Examples where Phylogenetic Species Recognition has been applied to fungi are reviewed and concerns regarding Phylogenetic Species Recognition are discussed.
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            How to fail at species delimitation.

            Species delimitation is the act of identifying species-level biological diversity. In recent years, the field has witnessed a dramatic increase in the number of methods available for delimiting species. However, most recent investigations only utilize a handful (i.e. 2-3) of the available methods, often for unstated reasons. Because the parameter space that is potentially relevant to species delimitation far exceeds the parameterization of any existing method, a given method necessarily makes a number of simplifying assumptions, any one of which could be violated in a particular system. We suggest that researchers should apply a wide range of species delimitation analyses to their data and place their trust in delimitations that are congruent across methods. Incongruence across the results from different methods is evidence of either a difference in the power to detect cryptic lineages across one or more of the approaches used to delimit species and could indicate that assumptions of one or more of the methods have been violated. In either case, the inferences drawn from species delimitation studies should be conservative, for in most contexts it is better to fail to delimit species than it is to falsely delimit entities that do not represent actual evolutionary lineages. © 2013 John Wiley & Sons Ltd.
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              A rapid DNA isolation procedure for small quantities of fresh leaf tissue

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                Author and article information

                Contributors
                Journal
                MycoKeys
                MycoKeys
                11
                urn:lsid:arphahub.com:pub:c004a564-9d6a-5f9f-b058-6a3815dfe9c3
                MycoKeys
                Pensoft Publishers
                1314-4057
                1314-4049
                2019
                09 May 2019
                : 52
                : 17-43
                Affiliations
                [1 ] Centre of the Region Haná for Biotechnological & Agricultural Research, Crop Research Institute, Dept. of Genetic Resources for Vegetables, Medicinal & Special Plants, Šlechtitelů 29, Olomouc-Holice, CZ-78371, Czech Republic Centre of the Region Haná for Biotechnological & Agricultural Research Olomouc Czech Republic
                Author notes
                Corresponding author: Michal Sochor ( michal.sochor@ 123456volny.cz )

                Academic editor: T. Lumbsch

                Article
                32335 urn:lsid:arphahub.com:pub:328df41d-8750-5b15-adac-b71ee382f32b
                10.3897/mycokeys.52.32335
                6522463
                31139008
                eb4188fb-f5cd-409b-96ce-03c34fcd566f
                Irena Petrželová, Michal Sochor

                This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 11 December 2018
                : 25 March 2019
                Funding
                Funded by: Ministerstvo Zemědělství 501100006533 http://doi.org/10.13039/501100006533
                Categories
                Research Article
                Morchellaceae
                Molecular systematics
                Phylogeny
                Species Inventories
                Taxonomy
                Central Europe
                Czech Republic

                gcpsr,mel-39, morchella ,multigene analysis,phylospecies,species concept

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