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      Centrin-deficient Leishmania mexicana confers protection against New World cutaneous leishmaniasis

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          Abstract

          Leishmaniasis is a neglected protozoan disease affecting over 12 million people globally with no approved vaccines for human use. New World cutaneous leishmaniasis (CL) caused by L. mexicana is characterized by the development of chronic non-healing skin lesions. Using the CRISPR/Cas9 technique, we have generated live attenuated centrin knockout L. mexicana (LmexCen −/− ) parasites. Centrin is a cytoskeletal protein important for cellular division in eukaryotes and, in Leishmania, is required only for intracellular amastigote replication. We have investigated the safety and immunogenicity characteristics of LmexCen −/− parasites by evaluating their survival and the cytokine production in bone-marrow-derived macrophages (BMDMs) and dendritic cells (BMDCs) in vitro. Our data shows that LmexCen −/− amastigotes present a growth defect, which results in significantly lower parasitic burdens and increased protective cytokine production in infected BMDMs and BMDCs, compared to the wild type (WT) parasites. We have also determined the safety and efficacy of LmexCen −/− in vivo using experimental murine models of L. mexicana. We demonstrate that LmexCen −/− parasites are safe and do not cause lesions in susceptible mouse models. Immunization with LmexCen −/− is also efficacious against challenge with WT L. mexicana parasites in genetically different BALB/c and C57BL/6 mouse models. Vaccinated mice did not develop cutaneous lesions, displayed protective immunity, and showed significantly lower parasitic burdens at the infection site and draining lymph nodes compared to the control group. Overall, we demonstrate that LmexCen −/− parasites are safe and efficacious against New World cutaneous leishmaniasis in pre-clinical models.

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          The Sequence Alignment/Map format and SAMtools

          Summary: The Sequence Alignment/Map (SAM) format is a generic alignment format for storing read alignments against reference sequences, supporting short and long reads (up to 128 Mbp) produced by different sequencing platforms. It is flexible in style, compact in size, efficient in random access and is the format in which alignments from the 1000 Genomes Project are released. SAMtools implements various utilities for post-processing alignments in the SAM format, such as indexing, variant caller and alignment viewer, and thus provides universal tools for processing read alignments. Availability: http://samtools.sourceforge.net Contact: rd@sanger.ac.uk
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            BEDTools: a flexible suite of utilities for comparing genomic features

            Motivation: Testing for correlations between different sets of genomic features is a fundamental task in genomics research. However, searching for overlaps between features with existing web-based methods is complicated by the massive datasets that are routinely produced with current sequencing technologies. Fast and flexible tools are therefore required to ask complex questions of these data in an efficient manner. Results: This article introduces a new software suite for the comparison, manipulation and annotation of genomic features in Browser Extensible Data (BED) and General Feature Format (GFF) format. BEDTools also supports the comparison of sequence alignments in BAM format to both BED and GFF features. The tools are extremely efficient and allow the user to compare large datasets (e.g. next-generation sequencing data) with both public and custom genome annotation tracks. BEDTools can be combined with one another as well as with standard UNIX commands, thus facilitating routine genomics tasks as well as pipelines that can quickly answer intricate questions of large genomic datasets. Availability and implementation: BEDTools was written in C++. Source code and a comprehensive user manual are freely available at http://code.google.com/p/bedtools Contact: aaronquinlan@gmail.com; imh4y@virginia.edu Supplementary information: Supplementary data are available at Bioinformatics online.
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              Of Mice and Not Men: Differences between Mouse and Human Immunology

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                Author and article information

                Contributors
                hira.nakhasi@fda.hhs.gov
                greg.matlashewski@mcgill.ca
                Abhay.Satoskar@osumc.edu
                Journal
                NPJ Vaccines
                NPJ Vaccines
                NPJ Vaccines
                Nature Publishing Group UK (London )
                2059-0105
                2 March 2022
                2 March 2022
                2022
                : 7
                : 32
                Affiliations
                [1 ]GRID grid.261331.4, ISNI 0000 0001 2285 7943, Department of Microbiology, , The Ohio State University, ; Columbus, OH 43210 USA
                [2 ]GRID grid.261331.4, ISNI 0000 0001 2285 7943, Department of Pathology, Wexner Medical Center, , The Ohio State University, ; Columbus, OH 43210 USA
                [3 ]GRID grid.14709.3b, ISNI 0000 0004 1936 8649, Department of Microbiology and Immunology, , McGill University, ; Montreal, QC Canada
                [4 ]GRID grid.290496.0, ISNI 0000 0001 1945 2072, Division of Emerging and Transfusion Transmitted Diseases, CBER, FDA, ; Silver Spring, MD USA
                [5 ]GRID grid.174567.6, ISNI 0000 0000 8902 2273, Department of Parasitology, Institute of Tropical Medicine (NEKKEN), The Joint Usage/Research Center on Tropical Disease, , Nagasaki University, Nagasaki University Graduate School of Biomedical Sciences Doctoral Leadership Program, ; Nagasaki, Japan
                Author information
                http://orcid.org/0000-0002-1112-7715
                http://orcid.org/0000-0003-2741-0942
                http://orcid.org/0000-0003-1368-9858
                http://orcid.org/0000-0002-5550-712X
                http://orcid.org/0000-0003-1884-1695
                http://orcid.org/0000-0003-3881-8337
                http://orcid.org/0000-0002-6557-8220
                http://orcid.org/0000-0001-5989-1520
                Article
                449
                10.1038/s41541-022-00449-1
                8891280
                35236861
                e7170b3b-5dd5-4fdd-a76d-98081a25a803
                © The Author(s) 2022

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 13 August 2021
                : 27 January 2022
                Funding
                Funded by: Global Health Innovative Technology (GHIT) Fund
                Categories
                Article
                Custom metadata
                © The Author(s) 2022

                live attenuated vaccines,vaccines
                live attenuated vaccines, vaccines

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