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      The Response of Mycobacterium Tuberculosis to Reactive Oxygen and Nitrogen Species

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          Abstract

          The bacteriostatic and bactericidal effects and the transcriptional response of Mycobacterium tuberculosis to representative oxidative and nitrosative stresses were investigated by growth and survival studies and whole genome expression analysis. The M. tuberculosis reaction to a range of hydrogen peroxide (H 2O 2) concentrations fell into three distinct categories: (1) low level exposure resulted in induction of a few highly sensitive H 2O 2-responsive genes, (2) intermediate exposure resulted in massive transcriptional changes without an effect on growth or survival, and (3) high exposure resulted in a muted transcriptional response and eventual death. M. tuberculosis appears highly resistant to DNA damage-dependent, mode-one killing caused by low millimolar levels of H 2O 2 and only succumbs to overwhelming levels of oxidative stress observed in mode-two killing. Nitric oxide (NO) exposure initiated much the same transcriptional response as H 2O 2. However, unlike H 2O 2 exposure, NO exposure induced dormancy-related genes and caused dose-dependent bacteriostatic activity without killing. Included in the large shared response to H 2O 2 and NO was the induction of genes encoding iron–sulfur cluster repair functions including iron acquisition. Stress regulons controlled by IdeR, Sigma H, Sigma E, and FurA comprised a large portion of the response to both stresses. Expression of several oxidative stress defense genes was constitutive, or increased moderately from an already elevated constitutive level, suggesting that bacilli are continually primed for oxidative stress defense.

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          Most cited references62

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          Iron-sulfur clusters: nature's modular, multipurpose structures.

          Iron-sulfur proteins are found in all life forms. Most frequently, they contain Fe2S2, Fe3S4, and Fe4S4 clusters. These modular clusters undergo oxidation-reduction reactions, may be inserted or removed from proteins, can influence protein structure by preferential side chain ligation, and can be interconverted. In addition to their electron transfer function, iron-sulfur clusters act as catalytic centers and sensors of iron and oxygen. Their most common oxidation states are paramagnetic and present significant challenges for understanding the magnetic properties of mixed valence systems. Iron-sulfur clusters now rank with such biological prosthetic groups as hemes and flavins in pervasive occurrence and multiplicity of function.
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            DnaE2 polymerase contributes to in vivo survival and the emergence of drug resistance in Mycobacterium tuberculosis.

            The presence of multiple copies of the major replicative DNA polymerase (DnaE) in some organisms, including important pathogens and symbionts, has remained an unresolved enigma. We postulated that one copy might participate in error-prone DNA repair synthesis. We found that UV irradiation of Mycobacterium tuberculosis results in increased mutation frequency in the surviving fraction. We identified dnaE2 as a gene that is upregulated in vitro by several DNA damaging agents, as well as during infection of mice. Loss of this protein reduces both survival of the bacillus after UV irradiation and the virulence of the organism in mice. Our data suggest that DnaE2, and not a member of the Y family of error-prone DNA polymerases, is the primary mediator of survival through inducible mutagenesis and can contribute directly to the emergence of drug resistance in vivo. These results may indicate a potential new target for therapeutic intervention.
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              ideR, An essential gene in mycobacterium tuberculosis: role of IdeR in iron-dependent gene expression, iron metabolism, and oxidative stress response.

              The mycobacterial IdeR protein is a metal-dependent regulator of the DtxR (diphtheria toxin repressor) family. In the presence of iron, it binds to a specific DNA sequence in the promoter regions of the genes that it regulates, thus controlling their transcription. In this study, we provide evidence that ideR is an essential gene in Mycobacterium tuberculosis. ideR cannot normally be disrupted in this mycobacterium in the absence of a second functional copy of the gene. However, a rare ideR mutant was obtained in which the lethal effects of ideR inactivation were alleviated by a second-site suppressor mutation and which exhibited restricted iron assimilation capacity. Studies of this strain and a derivative in which IdeR expression was restored allowed us to identify phenotypic effects resulting from ideR inactivation. Using DNA microarrays, the iron-dependent transcriptional profiles of the wild-type, ideR mutant, and ideR-complemented mutant strains were analyzed, and the genes regulated by iron and IdeR were identified. These genes encode a variety of proteins, including putative transporters, proteins involved in siderophore synthesis and iron storage, members of the PE/PPE family, a membrane protein involved in virulence, transcriptional regulators, and enzymes involved in lipid metabolism.
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                Author and article information

                Journal
                Front Microbiol
                Front. Microbio.
                Frontiers in Microbiology
                Frontiers Research Foundation
                1664-302X
                13 May 2011
                2011
                : 2
                : 105
                Affiliations
                [1] 1simpleDepartment of Microbiology, School of Medicine, University of Colorado Denver Aurora, CO, USA
                [2] 2simpleDivision of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford Medical School Stanford, CA, USA
                [3] 3simpleDepartment of Microbiology and Immunology, Stanford Medical School Stanford, CA, USA
                Author notes

                Edited by: Adel M. Talaat, University of Wisconsin Madison, USA

                Reviewed by: Thomas C. Zahrt, Medical College of Wisconsin, USA; Sarah Ward, University of Wisconsin Madison, USA; Gyanu Lamichhane, Johns Hopkins University, USA

                *Correspondence: Martin I. Voskuil, Department of Microbiology, School of Medicine, University of Colorado Denver, P18-9115, 12800 East 19th Avenue, P.O. Box 6511, Aurora, CO 80045, USA. e-mail: martin.voskuil@ 123456ucdenver.edu

                This article was submitted to Frontiers in Cellular and Infection Microbiology, a specialty of Frontiers in Microbiology.

                Article
                10.3389/fmicb.2011.00105
                3119406
                21734908
                e6fea6fc-26cb-4399-8065-37ec3874a480
                Copyright © 2011 Voskuil, Bartek, Visconti and Schoolnik.

                This is an open-access article subject to a non-exclusive license between the authors and Frontiers Media SA, which permits use, distribution and reproduction in other forums, provided the original authors and source are credited and other Frontiers conditions are complied with.

                History
                : 31 January 2011
                : 27 April 2011
                Page count
                Figures: 3, Tables: 1, Equations: 0, References: 74, Pages: 12, Words: 10491
                Categories
                Microbiology
                Original Research

                Microbiology & Virology
                reactive oxygen species,hydrogen peroxide,nitric oxide,microarray,reactive nitrogen species,mycobacterium tuberculosis

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