For Publishers
DiscoveryMetadataPeer reviewHostingPublishing
For Researchers
JoinPublishReviewCollect
Register
Blog
About
Search
Advanced search
My ScienceOpen
Search
For Publishers
For Researchers
Blog
About
8
views
6
references
 Top references
cited by
0
    
0 reviews
 Review
0
comments
 Comment
0
recommends
+1 Recommend
0 collections
    0
    shares
      228
      similar
       All similar
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Complete mitochondrial genome and the phylogenetic position of Halcyon smyrnensis (Aves: Coraciiformes)

      research-article

      Read this article at

      ScienceOpenPublisherPMC
      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          The complete mitochondrial genome of Halcyon smyrnensis was determined in this study. The mitogenomic length of Halcyon smyrnensis was 17 318 bp, including 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes and one control region. Phylogenetic analyses show that H. leucocephala, H. pileata and H. smyrnensis congregated together, and our sample was sister to H. pileata.

          Related collections

          Most cited references6

          • Record: found
          • Abstract: found
          • Article: not found

          MRBAYES: Bayesian inference of phylogenetic trees.

          J P Huelsenbeck, F Ronquist (2001)
          The program MRBAYES performs Bayesian inference of phylogeny using a variant of Markov chain Monte Carlo. MRBAYES, including the source code, documentation, sample data files, and an executable, is available at http://brahms.biology.rochester.edu/software.html.
          Article 0 comments Cited 2060 times – based on 0 reviews     Review now
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

            Alexandros Stamatakis (2006)
            RAxML-VI-HPC (randomized axelerated maximum likelihood for high performance computing) is a sequential and parallel program for inference of large phylogenies with maximum likelihood (ML). Low-level technical optimizations, a modification of the search algorithm, and the use of the GTR+CAT approximation as replacement for GTR+Gamma yield a program that is between 2.7 and 52 times faster than the previous version of RAxML. A large-scale performance comparison with GARLI, PHYML, IQPNNI and MrBayes on real data containing 1000 up to 6722 taxa shows that RAxML requires at least 5.6 times less main memory and yields better trees in similar times than the best competing program (GARLI) on datasets up to 2500 taxa. On datasets > or =4000 taxa it also runs 2-3 times faster than GARLI. RAxML has been parallelized with MPI to conduct parallel multiple bootstraps and inferences on distinct starting trees. The program has been used to compute ML trees on two of the largest alignments to date containing 25,057 (1463 bp) and 2182 (51,089 bp) taxa, respectively. icwww.epfl.ch/~stamatak
            Article 0 comments Cited 1537 times – based on 0 reviews     Review now
              Bookmark
              • Record: found
              • Abstract: not found
              • Article: not found

              Applications of mitochondrial DNA analysis in conservation: a critical review

              C Möritz (1994)
              Article 0 comments Cited 167 times – based on 0 reviews     Review now
                Bookmark
                All references

                Author and article information

                Journal
                Journal ID (nlm-ta): Mitochondrial DNA B Resour
                Journal ID (iso-abbrev): Mitochondrial DNA B Resour
                Title: Mitochondrial DNA. Part B, Resources
                Publisher: Taylor & Francis
                ISSN (Electronic): 2380-2359
                Publication date (Electronic, pub): 5 February 2016
                Publication date (Electronic, collection): 2016
                Volume: 1
                Issue: 1
                Pages: 81-82
                Affiliations
                [a ]College of Life Sciences, Yantai University , Yantai, Shandong, China;
                [b ]School of Biological Science and Technology, Qiongzhou University , Sanya, Hainan, China
                Author notes
                CONTACT Jiangyong Qu springqjy@ 123456126.com College of Life Sciences, Yantai University , Yantai264005, Shandong, China
                Article
                Publisher ID: 1137833
                DOI: 10.1080/23802359.2015.1137833
                PMC ID: 7800661
                SO-VID: e5528ad3-7436-41d2-b3ad-b33254ba1e8d
                Copyright © © 2016 The Author(s). Published by Taylor & Francis.
                License:

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/Licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                Page count
                Figures: 1, Pages: 2
                Categories
                Subject: Research Article
                Subject: Mitogenome Announcement

                Keywords: halcyon smyrnensis,mitochondrial genome,mitogenomic evolution
                Data availability:
                Keywords: halcyon smyrnensis, mitochondrial genome, mitogenomic evolution

                Comments

                Comment on this article