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      Comparative Proteomic Analysis for a Putative Pyridoxal Phosphate-Dependent Aminotransferase Required for Virulence in Acidovorax citrulli

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          Abstract

          Acidovorax citrulli ( Ac) is the causative agent of bacterial fruit blotch disease in watermelon. Since resistant cultivars have not yet been developed, the virulence factors/mechanisms of Ac need to be characterized. This study reports the functions of a putative pyridoxal phosphate-dependent aminotransferase (PpdaAc) that transfers amino groups to its substrates and uses pyridoxal phosphate as a coenzyme. It was observed that a ppdaAc knockout mutant had a significantly reduced virulence in watermelon when introduced via germinated-seed inoculation as well as leaf infiltration. Comparative proteomic analysis predicted the cellular mechanisms related to PpdaAc. Apart from causing virulence, the PpdaAc may have significant roles in energy production, cell membrane, motility, chemotaxis, post-translational modifications, and iron-related mechanisms. Therefore, it is postulated that PpdaAc may possess pleiotropic effects. These results provide new insights into the functions of a previously unidentified PpdaAc in Ac.

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          Most cited references39

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          The COG database: a tool for genome-scale analysis of protein functions and evolution.

          Rational classification of proteins encoded in sequenced genomes is critical for making the genome sequences maximally useful for functional and evolutionary studies. The database of Clusters of Orthologous Groups of proteins (COGs) is an attempt on a phylogenetic classification of the proteins encoded in 21 complete genomes of bacteria, archaea and eukaryotes (http://www. ncbi.nlm. nih.gov/COG). The COGs were constructed by applying the criterion of consistency of genome-specific best hits to the results of an exhaustive comparison of all protein sequences from these genomes. The database comprises 2091 COGs that include 56-83% of the gene products from each of the complete bacterial and archaeal genomes and approximately 35% of those from the yeast Saccharomyces cerevisiae genome. The COG database is accompanied by the COGNITOR program that is used to fit new proteins into the COGs and can be applied to functional and phylogenetic annotation of newly sequenced genomes.
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            Making sense of it all: bacterial chemotaxis.

            Bacteria must be able to respond to a changing environment, and one way to respond is to move. The transduction of sensory signals alters the concentration of small phosphorylated response regulators that bind to the rotary flagellar motor and cause switching. This simple pathway has provided a paradigm for sensory systems in general. However, the increasing number of sequenced bacterial genomes shows that although the central sensory mechanism seems to be common to all bacteria, there is added complexity in a wide range of species.
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              Respiratory metabolism: glycolysis, the TCA cycle and mitochondrial electron transport.

              The respiratory pathways of glycolysis, the tricarboxylic acid (TCA) cycle and the mitochondrial electron transport chain are ubiquitous throughout nature. They are essential for both energy provision in heterotrophic cells and a wide range of other physiological functions. Although the series of enzymes and proteins that participate in these pathways have long been known, their regulation and control are much less well understood. Further complexity arises due to the extensive interaction among these pathways in particular, and also between cytosolic and mitochondrial metabolism in general. These interactions include those between mitochondrial function in the photosynthetic and photorespiratory processes, amino-acid biosynthesis and the regulation of cellular redox. Recently, a wide range of molecular and biochemical strategies have been adopted to elucidate the functional significance of these interactions.
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                Author and article information

                Journal
                Plant Pathol J
                Plant Pathol J
                The Plant Pathology Journal
                Korean Society of Plant Pathology
                1598-2254
                2093-9280
                December 2021
                1 December 2021
                : 37
                : 6
                : 673-680
                Affiliations
                Department of Plant Science and Technology, Chung-Ang University, Anseong 17546, Korea
                Author notes
                [* ]Corresponding author: Phone) +82-31-670-3150, FAX) +82-2-670-8845, E-mail) swhan@ 123456cau.ac.kr

                Handling Editor: Chang-Jin Park

                Author information
                https://orcid.org/0000-0002-0893-1438
                Article
                ppj-nt-09-2021-0139
                10.5423/PPJ.NT.09.2021.0139
                8666244
                34897258
                e20e0deb-45e6-4c2a-bf7c-06ff6e36484b
                © The Korean Society of Plant Pathology

                This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( http://creativecommons.org/licenses/by-nc/4.0) which permits unrestricted noncommercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 9 September 2021
                : 6 October 2021
                : 13 October 2021
                Categories
                Note

                acidovorax citrulli,proteomics,pyridoxal phosphate-dependent aminotransferase

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