Guillaume Gautreau:
ORCID: http://orcid.org/0000-0002-0970-9361
Role: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole:
SoftwareRole: VisualizationRole: Writing – original draftRole: Writing – review &
editing
Adelme Bazin:
ORCID: http://orcid.org/0000-0002-5656-4708
Role: Data curationRole: Formal analysisRole: InvestigationRole: SoftwareRole: Writing
– original draftRole: Writing – review & editing
Mathieu Gachet: Role: Data curation
Rémi Planel:
ORCID: http://orcid.org/0000-0002-7826-3316
Role: Data curation
Laura Burlot: Role: Data curation
Mathieu Dubois:
ORCID: http://orcid.org/0000-0003-1490-7271
Role: Data curationRole: Writing – review & editing
Amandine Perrin:
ORCID: http://orcid.org/0000-0003-4797-6185
Role: Data curation
Claudine Médigue:
ORCID: http://orcid.org/0000-0002-3905-1054
Role: Writing – review & editing
Alexandra Calteau: Role: Writing – review & editing
Stéphane Cruveiller:
ORCID: http://orcid.org/0000-0002-2342-9729
Role: Writing – review & editing
Catherine Matias: Role: MethodologyRole: Writing – review & editing
Christophe Ambroise: Role: MethodologyRole: Writing – review & editing
Eduardo P. C. Rocha:
ORCID: http://orcid.org/0000-0001-7704-822X
Role: Writing – original draftRole: Writing – review & editing
David Vallenet:
ORCID: http://orcid.org/0000-0001-6648-0332
Role: ConceptualizationRole: SupervisionRole: Writing – original draftRole: Writing
– review & editing
Christos A. Ouzounis: Role: Editor
Journal ID (nlm-ta): PLoS Comput Biol
Journal ID (iso-abbrev): PLoS Comput. Biol
Journal ID (publisher-id): plos
Journal ID (pmc): ploscomp
Title:
PLoS Computational Biology
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Print):
1553-734X
ISSN
(Electronic):
1553-7358
Publication date Collection:
March
2020
Publication date
(Electronic):
19
March
2020
Volume: 16
Issue: 3
Electronic Location Identifier: e1007732
Affiliations
[1
]
LABGeM, Génomique Métabolique, CEA, Genoscope, Institut François Jacob, Université
d’Évry, Université Paris-Saclay, CNRS, Evry, France
[2
]
Microbial Evolutionary Genomics, Institut Pasteur, CNRS, UMR3525, Paris, France
[3
]
Sorbonne Université, Collège doctoral, Paris, France
[4
]
Laboratoire de Probabilités, Statistique et Modélisation, Sorbonne Université, Université
de Paris, Centre National de la Recherche Scientifique, Paris, France
[5
]
Laboratoire de Mathématiques et Modélisation d’Evry, UMR CNRS 8071, Université d’Evry
Val d’Essonne, Evry, France
Author notes
The authors have declared that no competing interests exist.
[¤a]
Current address: Hub de Bioinformatique et Biostatistique - Département Biologie Computationnelle,
Institut Pasteur, USR 3756 CNRS, Paris, France
[¤b]
Current address: PathoQuest SAS, BioPark – bâtiment B, 11 rue Watt, 75013 Paris, France
Author information
Article
Publisher ID:
PCOMPBIOL-D-19-02015
DOI: 10.1371/journal.pcbi.1007732
PMC ID: 7108747
PubMed ID: 32191703
SO-VID: e1b3b3c4-a2ba-43d2-987c-6517aaf52b82
Copyright © © 2020 Gautreau et al
License:
This is an open access article distributed under the terms of the
Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided
the original author and source are credited.
Funded by: Agence Nationale de la Recherche
Award ID: ANR-16-CE12-29
Award Recipient
:
ORCID: http://orcid.org/0000-0001-7704-822X
Eduardo P. C. Rocha
Funded by: Agence Nationale de la Recherche
Award ID: ANR-11-INBS-0013
Award Recipient
:
Laura Burlot
Funded by: Agence Nationale de la Recherche
Award ID: ANR-10-INBS-09-08
Award Recipient
:
ORCID: http://orcid.org/0000-0002-7826-3316
Rémi Planel
This research was supported in part by the IRTELIS and Phare PhD programs of the French
Alternative Energies and Atomic Energy Commission (CEA) for GG and AB respectively,
the French Government "Investissements d’Avenir" programs (namely FRANCE GENOMIQUE
[ANR-10-INBS-09-08], the INSTITUT FRANÇAIS DE BIOINFORMATIQUE [ANR-11-INBS-0013],
and the Agence Nationale de la Recherche [Projet ANR-16-CE12-29 for EPCR]). The funders
had no role in study design, data collection and analysis, decision to publish, or
preparation of the manuscript.
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Comparative Genomics
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