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      Roles of lignin biosynthesis and regulatory genes in plant development

      research-article
      1 , 2 , 1 , 2 , 1 , 3 ,
      Journal of Integrative Plant Biology
      John Wiley and Sons Inc.
      Development, lignin, rice

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          Abstract

          Lignin is an important factor affecting agricultural traits, biofuel production, and the pulping industry. Most lignin biosynthesis genes and their regulatory genes are expressed mainly in the vascular bundles of stems and leaves, preferentially in tissues undergoing lignification. Other genes are poorly expressed during normal stages of development, but are strongly induced by abiotic or biotic stresses. Some are expressed in non‐lignifying tissues such as the shoot apical meristem. Alterations in lignin levels affect plant development. Suppression of lignin biosynthesis genes causes abnormal phenotypes such as collapsed xylem, bending stems, and growth retardation. The loss of expression by genes that function early in the lignin biosynthesis pathway results in more severe developmental phenotypes when compared with plants that have mutations in later genes. Defective lignin deposition is also associated with phenotypes of seed shattering or brittle culm. MYB and NAC transcriptional factors function as switches, and some homeobox proteins negatively control lignin biosynthesis genes. Ectopic deposition caused by overexpression of lignin biosynthesis genes or master switch genes induces curly leaf formation and dwarfism.

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          Most cited references60

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          A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis.

          SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN1 (SND1) is a master transcriptional switch activating the developmental program of secondary wall biosynthesis. Here, we demonstrate that a battery of SND1-regulated transcription factors is required for normal secondary wall biosynthesis in Arabidopsis thaliana. The expression of 11 SND1-regulated transcription factors, namely, SND2, SND3, MYB103, MYB85, MYB52, MYB54, MYB69, MYB42, MYB43, MYB20, and KNAT7 (a Knotted1-like homeodomain protein), was developmentally associated with cells undergoing secondary wall thickening. Of these, dominant repression of SND2, SND3, MYB103, MYB85, MYB52, MYB54, and KNAT7 significantly reduced secondary wall thickening in fiber cells. Overexpression of SND2, SND3, and MYB103 increased secondary wall thickening in fibers, and overexpression of MYB85 led to ectopic deposition of lignin in epidermal and cortical cells in stems. Furthermore, SND2, SND3, MYB103, MYB85, MYB52, and MYB54 were able to induce secondary wall biosynthetic genes. Direct target analysis using the estrogen-inducible system revealed that MYB46, SND3, MYB103, and KNAT7 were direct targets of SND1 and also of its close homologs, NST1, NST2, and vessel-specific VND6 and VND7. Together, these results demonstrate that a transcriptional network consisting of SND1 and its downstream targets is involved in regulating secondary wall biosynthesis in fibers and that NST1, NST2, VND6, and VND7 are functional homologs of SND1 that regulate the same downstream targets in different cell types.
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            Functional analysis of the Arabidopsis PAL gene family in plant growth, development, and response to environmental stress.

            Phenylalanine ammonia-lyase (PAL) catalyzes the first step of the phenylpropanoid pathway, which produces precursors to a variety of important secondary metabolites. Arabidopsis (Arabidopsis thaliana) contains four PAL genes (PAL1-PAL4), but there has been no genetic analysis to assess the biological functions of the entire gene family. Here, we report the generation and analysis of combined mutations for the four Arabidopsis PAL genes. Contrary to a previous report, we found that three independent pal1 pal2 double mutants were fertile and generated yellow seeds due to the lack of condensed tannin pigments in the seed coat. The pal1 pal2 double mutants were also deficient in anthocyanin pigments in various plant tissues, which accumulate in wild-type plants under stress conditions. Thus, PAL1 and PAL2 have a redundant role in flavonoid biosynthesis. Furthermore, the pal1 pal2 double mutants were more sensitive to ultraviolet-B light but more tolerant to drought than wild-type plants. We have also generated two independent pal1 pal2 pal3 pal4 quadruple knockout mutants, which are stunted and sterile. The quadruple knockout mutants still contained about 10% of the wild-type PAL activity, which might result from one or more leaky pal mutant genes or from other unknown PAL genes. The quadruple mutants also accumulated substantially reduced levels of salicylic acid and displayed increased susceptibility to a virulent strain of the bacterial pathogen Pseudomonas syringae. These results provide further evidence for both distinct and overlapping roles of the Arabidopsis PAL genes in plant growth, development, and responses to environmental stresses.
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              Abiotic and biotic stresses and changes in the lignin content and composition in plants.

              Lignin is a polymer of phenylpropanoid compounds formed through a complex biosynthesis route, represented by a metabolic grid for which most of the genes involved have been sequenced in several plants, mainly in the model-plants Arabidopsis thaliana and Populus. Plants are exposed to different stresses, which may change lignin content and composition. In many cases, particularly for plant-microbe interactions, this has been suggested as defence responses of plants to the stress. Thus, understanding how a stressor modulates expression of the genes related with lignin biosynthesis may allow us to develop study-models to increase our knowledge on the metabolic control of lignin deposition in the cell wall. This review focuses on recent literature reporting on the main types of abiotic and biotic stresses that alter the biosynthesis of lignin in plants.
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                Author and article information

                Contributors
                enean@khu.ac.kr
                Journal
                J Integr Plant Biol
                J Integr Plant Biol
                10.1111/(ISSN)1744-7909
                JIPB
                Journal of Integrative Plant Biology
                John Wiley and Sons Inc. (Hoboken )
                1672-9072
                1744-7909
                10 November 2015
                November 2015
                : 57
                : 11 , Translational Plant Biology ( doiID: 10.1111/jipb.v57.11 )
                : 902-912
                Affiliations
                [ 1 ] Crop Biotech InstituteKyung Hee University Yongin 446‐701Korea
                [ 2 ] Department of Life SciencePohang University of Science and Technology Pohang 790‐784Korea
                [ 3 ] Graduate School of BiotechnologyKyung Hee University Yongin 446‐701Korea
                Author notes
                [*] [* ] Correspondence: genean@ 123456khu.ac.kr

                Article
                JIPB12422
                10.1111/jipb.12422
                5111759
                26297385
                e01b71c3-8fe9-4781-9fec-371e0c6e6d0a
                © 2015 The Authors. Journal of Integrative Plant Biology published by Wiley Publishing Asia Pty Ltd on behalf of Institute of Botany, Chinese Academy of Sciences.

                This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial‐NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.

                History
                : 22 February 2015
                : 19 August 2015
                Page count
                Figures: 3, Tables: 1, Pages: 11, Words: 8657
                Funding
                Funded by: Basic Research Promotion Fund, Republic of Korea
                Award ID: KRF‐2007‐0093862
                Funded by: The Next‐Generation BioGreen 21 Program (Plant Molecular Breeding Center)
                Award ID: PJ01108001
                Funded by: The Rural Development Administration, Republic of Korea
                Funded by: Kyung Hee University
                Award ID: 20130214
                Categories
                Invited Expert Review
                Invited Expert Reviews
                Custom metadata
                2.0
                jipb12422
                November 2015
                Converter:WILEY_ML3GV2_TO_NLMPMC version:4.9.7 mode:remove_FC converted:16.11.2016

                development,lignin,rice
                development, lignin, rice

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