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      Deregulation of neuronal miRNAs induced by amyloid-β or TAU pathology

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          Abstract

          Background

          Despite diverging levels of amyloid-β (Aβ) and TAU pathology, different mouse models, as well as sporadic AD patients show predictable patterns of episodic memory loss. MicroRNA (miRNA) deregulation is well established in AD brain but it is unclear whether Aβ or TAU pathology drives those alterations and whether miRNA changes contribute to cognitive decline.

          Methods

          miRNAseq was performed on cognitively intact (4 months) and impaired (10 months) male APPtg (APP swe/PS1 L166P) and TAUtg (THY-Tau22) mice and their wild-type littermates (APPwt and TAUwt). We analyzed the hippocampi of 12 mice per experimental group ( n = 96 in total), and employed a 2-way linear model to extract differentially expressed miRNAs. Results were confirmed by qPCR in a separate cohort of 4 M and 10 M APPtg and APPwt mice ( n = 7–9 per group) and in human sporadic AD and non-demented control brain. Fluorescent in situ hybridization identified their cellular expression. Functional annotation of predicted targets was performed using GO enrichment. Behavior of wild-type mice was assessed after intracerebroventricular infusion of miRNA mimics.

          Results

          Six miRNAs (miR-10a-5p, miR-142a-5p, miR-146a-5p, miR-155-5p, miR-211-5p, miR-455-5p) are commonly upregulated between APPtg and TAUtg mice, and four of these (miR-142a-5p, miR-146a-5p, miR-155-5p and miR-455-5p) are altered in AD patients. All 6 miRNAs are strongly enriched in neurons. Upregulating these miRNAs in wild-type mice is however not causing AD-related cognitive disturbances.

          Conclusion

          Diverging AD-related neuropathologies induce common disturbances in the expression of neuronal miRNAs. 4 of these miRNAs are also upregulated in AD patients. Therefore these 4 miRNAs (miR-142a-5p, miR-146a-5p, miR-155-5p and miR-455-5p) appear part of a core pathological process in AD patients and APPtg and TAUtg mice. They are however not causing cognitive disturbances in wild-type mice. As some of these miRNA target AD relevant proteins, they may be, in contrast, part of a protective response in AD.

          Electronic supplementary material

          The online version of this article (10.1186/s13024-018-0285-1) contains supplementary material, which is available to authorized users.

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          Most cited references40

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          Is Open Access

          featureCounts: An efficient general-purpose program for assigning sequence reads to genomic features

          , , (2013)
          Next-generation sequencing technologies generate millions of short sequence reads, which are usually aligned to a reference genome. In many applications, the key information required for downstream analysis is the number of reads mapping to each genomic feature, for example to each exon or each gene. The process of counting reads is called read summarization. Read summarization is required for a great variety of genomic analyses but has so far received relatively little attention in the literature. We present featureCounts, a read summarization program suitable for counting reads generated from either RNA or genomic DNA sequencing experiments. featureCounts implements highly efficient chromosome hashing and feature blocking techniques. It is considerably faster than existing methods (by an order of magnitude for gene-level summarization) and requires far less computer memory. It works with either single or paired-end reads and provides a wide range of options appropriate for different sequencing applications. featureCounts is available under GNU General Public License as part of the Subread (http://subread.sourceforge.net) or Rsubread (http://www.bioconductor.org) software packages.
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            A brain-specific microRNA regulates dendritic spine development.

            MicroRNAs are small, non-coding RNAs that control the translation of target messenger RNAs, thereby regulating critical aspects of plant and animal development. In the mammalian nervous system, the spatiotemporal control of mRNA translation has an important role in synaptic development and plasticity. Although a number of microRNAs have been isolated from the mammalian brain, neither the specific microRNAs that regulate synapse function nor their target mRNAs have been identified. Here we show that a brain-specific microRNA, miR-134, is localized to the synapto-dendritic compartment of rat hippocampal neurons and negatively regulates the size of dendritic spines--postsynaptic sites of excitatory synaptic transmission. This effect is mediated by miR-134 inhibition of the translation of an mRNA encoding a protein kinase, Limk1, that controls spine development. Exposure of neurons to extracellular stimuli such as brain-derived neurotrophic factor relieves miR-134 inhibition of Limk1 translation and in this way may contribute to synaptic development, maturation and/or plasticity.
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              Translational control of long-lasting synaptic plasticity and memory.

              Long-lasting forms of synaptic plasticity and memory are dependent on new protein synthesis. Recent advances obtained from genetic, physiological, pharmacological, and biochemical studies provide strong evidence that translational control plays a key role in regulating long-term changes in neural circuits and thus long-term modifications in behavior. Translational control is important for regulating both general protein synthesis and synthesis of specific proteins in response to neuronal activity. In this review, we summarize and discuss recent progress in the field and highlight the prospects for better understanding of long-lasting changes in synaptic strength, learning, and memory and implications for neurological diseases.
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                Author and article information

                Contributors
                annerieke.sierksma@kuleuven.vib.be
                ashley.lu@kuleuven.vib.be
                evgenia.salta@kuleuven.vib.be
                elke.vandeneynden@kuleuven.vib.be
                zsuzsanna.vegh@kuleuven.be
                rudi.dhooge@kuleuven.be
                david.blum@inserm.fr
                luc.buee@inserm.fr
                mark.fiers@kuleuven.vib.be
                bart.destrooper@kuleuven.vib.be
                Journal
                Mol Neurodegener
                Mol Neurodegener
                Molecular Neurodegeneration
                BioMed Central (London )
                1750-1326
                12 October 2018
                12 October 2018
                2018
                : 13
                : 54
                Affiliations
                [1 ]VIB Center for Brain & Disease Research, Leuven, Belgium
                [2 ]ISNI 0000 0001 0668 7884, GRID grid.5596.f, Department of Neurosciences, Leuven research Institute for Neuroscience and Disease (LIND), , KU Leuven, ; Leuven, Belgium
                [3 ]ISNI 0000 0001 0668 7884, GRID grid.5596.f, Faculty of Psychology and Educational Sciences, Laboratory of Biological Psychology, , KU Leuven, ; Leuven, Belgium
                [4 ]Université Lille, INSERM, CHU Lille, UMR-S 1172, LabEx DISTALZ, Alzheimer & Tauopathies, Lille, France
                [5 ]ISNI 0000000121901201, GRID grid.83440.3b, Dementia Research Institute UK, ION, University College London, ; London, UK
                Article
                285
                10.1186/s13024-018-0285-1
                6186090
                30314521
                dda7ed62-6e6f-4690-9249-943ccb64d517
                © The Author(s). 2018

                Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

                History
                : 13 April 2018
                : 27 September 2018
                Funding
                Funded by: Alzheimer Research Foundation (Belgium)
                Award ID: P#16017
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100001665, Agence Nationale de la Recherche;
                Award ID: ANR-16-COEN-0007
                Funded by: Leuven Universitair Fonds
                Award ID: Opening the Future Campaign
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100011199, FP7 Ideas: European Research Council;
                Award ID: ERC-2010-AG_268675
                Award Recipient :
                Funded by: Vlaams Initiatief voor Netwerken voor Dementie Onderzoek
                Award ID: Strategic Basic Research Grant 135043
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100004727, Vlaams Instituut voor Biotechnologie;
                Funded by: Vlaamse Overheid & KU Leuven
                Award ID: Methusalem grant
                Award Recipient :
                Funded by: FWO
                Award ID: 12A5316N​
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000957, Alzheimer's Association;
                Award ID: AARF-16-442853
                Award Recipient :
                Funded by: Geneeskundige Stichting Koningin Elisabeth
                Categories
                Research Article
                Custom metadata
                © The Author(s) 2018

                Neurosciences
                alzheimer’s disease,microrna,mirna-seq,in situ hybridization,mir-mimic
                Neurosciences
                alzheimer’s disease, microrna, mirna-seq, in situ hybridization, mir-mimic

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