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      Island hoppers: Integrative taxonomic revision of Hogna wolf spiders (Araneae, Lycosidae) endemic to the Madeira islands with description of a new species

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          Abstract

          Because of their ability for aerial dispersal using silk and preference for open habitats, many wolf spiders are formidable colonisers. Pioneering arachnologists were already aware of the large and colourful wolf spiders in the Madeira archipelago, currently included in the genus Hogna Simon, 1885. The origins were investigated and species boundaries of Madeiran Hogna examined by integrating target-gene and morphological information. A multi-locus phylogenetic analysis of a thorough sampling across wolf-spider diversity suggested a single origin of Madeiran endemics, albeit with low support. Divergence time estimation traced back their origin to the late Miocene, a time of major global cooling that drove the expansion of grasslands and the associated fauna. Morphological examination of types and newly collected material revealed a new species, hereby described as H. isambertoi Crespo, sp. nov. Additionally, H. blackwalli is revalidated and three new synonymies are proposed, namely H. biscoitoi Wunderlich, 1992, junior synonym of H. insularum Kulczynski, 1899, H. schmitzi Wunderlich, 1992, junior synonym of H. maderiana (Walckenaer, 1837), and Arctosa maderana Roewer, 1960 junior synonym of H. ferox (Lucas, 1838). Species delimitation analyses of mitochondrial and nuclear markers provided additional support for morphological delineations. The species pair H. insularum and H. maderiana , however, constituted an exception: the lack of exclusive haplotypes in the examined markers, along with the discovery of intermediate forms, pointed to hybridisation between these two species as reported in other congeneric species on islands. Finally, the conservation status of the species is discussed and candidates for immediate conservation efforts are identified.

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          MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

          We report a major update of the MAFFT multiple sequence alignment program. This version has several new features, including options for adding unaligned sequences into an existing alignment, adjustment of direction in nucleotide alignment, constrained alignment and parallel processing, which were implemented after the previous major update. This report shows actual examples to explain how these features work, alone and in combination. Some examples incorrectly aligned by MAFFT are also shown to clarify its limitations. We discuss how to avoid misalignments, and our ongoing efforts to overcome such limitations.
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            MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

            The Molecular Evolutionary Genetics Analysis (Mega) software implements many analytical methods and tools for phylogenomics and phylomedicine. Here, we report a transformation of Mega to enable cross-platform use on Microsoft Windows and Linux operating systems. Mega X does not require virtualization or emulation software and provides a uniform user experience across platforms. Mega X has additionally been upgraded to use multiple computing cores for many molecular evolutionary analyses. Mega X is available in two interfaces (graphical and command line) and can be downloaded from www.megasoftware.net free of charge.
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              MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

              Since its introduction in 2001, MrBayes has grown in popularity as a software package for Bayesian phylogenetic inference using Markov chain Monte Carlo (MCMC) methods. With this note, we announce the release of version 3.2, a major upgrade to the latest official release presented in 2003. The new version provides convergence diagnostics and allows multiple analyses to be run in parallel with convergence progress monitored on the fly. The introduction of new proposals and automatic optimization of tuning parameters has improved convergence for many problems. The new version also sports significantly faster likelihood calculations through streaming single-instruction-multiple-data extensions (SSE) and support of the BEAGLE library, allowing likelihood calculations to be delegated to graphics processing units (GPUs) on compatible hardware. Speedup factors range from around 2 with SSE code to more than 50 with BEAGLE for codon problems. Checkpointing across all models allows long runs to be completed even when an analysis is prematurely terminated. New models include relaxed clocks, dating, model averaging across time-reversible substitution models, and support for hard, negative, and partial (backbone) tree constraints. Inference of species trees from gene trees is supported by full incorporation of the Bayesian estimation of species trees (BEST) algorithms. Marginal model likelihoods for Bayes factor tests can be estimated accurately across the entire model space using the stepping stone method. The new version provides more output options than previously, including samples of ancestral states, site rates, site d N /d S rations, branch rates, and node dates. A wide range of statistics on tree parameters can also be output for visualization in FigTree and compatible software.
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                Author and article information

                Contributors
                Journal
                Zookeys
                Zookeys
                2
                urn:lsid:arphahub.com:pub:45048D35-BB1D-5CE8-9668-537E44BD4C7E
                urn:lsid:zoobank.org:pub:91BD42D4-90F1-4B45-9350-EEF175B1727A
                ZooKeys
                Pensoft Publishers
                1313-2989
                1313-2970
                2022
                16 February 2022
                : 1086
                : 84-135
                Affiliations
                [1 ] Department of Evolutionary Biology, Ecology and Environmental Sciences (Arthropods), Biodiversity Research Institute (IRBio), Universitat de Barcelona, Av. Diagonal 643, 08028 Barcelona, Spain Universitat de Barcelona Barcelona Spain
                [2 ] Laboratory for Integrative Biodiversity Research (LIBRe), Finnish Museum of Natural History (LUOMUS), University of Helsinki, P.O. Box 17, 00014 Helsinki, Finland University of Helsinki Helsinki Finland
                [3 ] Instituto das Florestas e Conservação da Natureza IP-RAM, Jardim Botânico da Madeira, Caminho do Meio, Bom Sucesso, 9064-512, Funchal, Portugal Instituto das Florestas e Conservação da Natureza IP-RAM, Jardim Botânico da Madeira Funchal Portugal
                Author notes
                Corresponding author: Luís C. Crespo ( luiscarloscrespo@ 123456gmail.com )

                Academic editor: Ingi Agnarsson

                Author information
                https://orcid.org/0000-0002-5388-5661
                https://orcid.org/0000-0001-8119-9960
                https://orcid.org/0000-0003-1402-4727
                Article
                68015
                10.3897/zookeys.1086.68015
                8866340
                dcd1d7b0-ad8a-477d-b539-d70ff49ba266
                Luís C. Crespo, Isamberto Silva, Alba Enguídanos, Pedro Cardoso, Miquel Arnedo

                This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 28 April 2021
                : 13 December 2021
                Funding
                L.C. was funded by an individual PhD grant SFRH/ BD/110280/2015 from Foundation for Science and Technology (FCT, Portugal). This work was supported by project CGL2016-80651-P from the Spanish Ministry of Economy and Competitivity (M.A.). Additional funds were provided by the project 2017SGR83 from the Catalan Government (M.A.).
                Categories
                Research Article
                Araneae
                Lycosidae
                Biogeography
                Conservation Biology
                Phylogeny
                Taxonomy
                Atlantic Ocean
                Portugal
                Southern Europe and Mediterranean

                Animal science & Zoology
                endangered species,island radiation,lycosinae,macaronesia,morphological polymorphism,species delimitation

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