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      Single-cell immune landscape of human atherosclerotic plaques

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      1 , 2 , 3 , 4 , 3 , 2 , 3 , 4 , 1 , 1 , 1 , 1 , 5 , 2 , 10 , 11 , 6 , 6 , 6 , 7 , 12 , 1 , 4 , 8 , 2 , 3 , 9 , 2 , 3 , 10 , 5 , 7 , 6 , 2 , 3 , 10 , 1 , 2 , 4 , *
      Nature medicine
      Atherosclerotic plaque, T cells, macrophages, cerebrovascular events, Stroke, CyTOF, scRNA-seq, CITE-seq, cell-cell interactions, IL-1β, PD-1, T cell exhaustion

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          SUMMARY

          Atherosclerosis is driven by multifaceted contributions of the immune system within the circulation and at vascular focal sites. However, specific characteristics of dysregulated immune cells within atherosclerotic lesions that lead to clinical events such as ischemic stroke or myocardial infarction are poorly understood. Here, using single-cell proteomic and transcriptomic analyses we uncovered distinct features of both T cells and macrophages in carotid artery plaques of patients with clinically symptomatic disease (recent stroke or transient ischemic attack) compared to asymptomatic disease (no recent stroke). Plaques from symptomatic patients were characterized by a distinct subset of CD4 + T cells and by T cells that were activated and differentiated. Moreover, some T cell subsets in these plaques presented markers of T cell exhaustion. Additionally, macrophages from these plaques contained alternatively activated phenotypes, including subsets associated with plaque vulnerability. In plaques from asymptomatic patients, T cells and macrophages were activated and displayed evidence of IL-1β signaling. The identification of specific features of innate and adaptive immune cells in plaques that are associated with cerebrovascular events may enable the design of more precisely tailored cardiovascular immunotherapies.

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          Innate Immune Landscape in Early Lung Adenocarcinoma by Paired Single-Cell Analyses

          To guide the design of immunotherapy strategies for patients with early stage lung tumors, we developed a multiscale immune profiling strategy to map the immune landscape of early lung adenocarcinoma lesions to search for tumor-driven immune changes. Utilizing a barcoding method that allows a simultaneous single cell analysis of the tumor, non-involved lung and blood cells together with multiplex tissue imaging to assess spatial cell distribution, we provide a detailed immune cell atlas of early lung tumors. We show that stage I lung adenocarcinoma lesions already harbor significantly altered T cell and NK cell compartments. Moreover, we identified changes in tumor infiltrating myeloid cell (TIM) subsets that likely compromise anti-tumor T cell immunity. Paired single cell analyses thus offer valuable knowledge of tumor-driven immune changes, providing a powerful tool for the rational design of immune therapies. Comparing single tumor cells with adjacent normal tissue and blood from patients with lung adenocarcinoma charts early changes in tumor immunity and provides insights to guide immunotherapy design.
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            Single-Cell RNA-Seq Reveals the Transcriptional Landscape and Heterogeneity of Aortic Macrophages in Murine Atherosclerosis

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              Monocyte-Macrophages and T Cells in Atherosclerosis

              Atherosclerosis is an arterial disease process characterized by the focal subendothelial accumulation of apolipoprotein B-lipoproteins, immune and vascular wall cells, and extracellular matrix. The lipoproteins acquire features of damage-associated molecular patterns and trigger first an innate immune response, dominated by monocyte-macrophages, and then an adaptive immune response. These inflammatory responses often become chronic and non-resolving, leading to arterial damage and thrombosis-induced organ infarction. The innate immune response is regulated at various stages, from hematopoiesis through monocyte changes and macrophage activation. The adaptive immune response is regulated primarily by mechanisms that affect the balance of regulatory vs. effector T cells. Mechanisms related to cellular cholesterol, phenotypic plasticity, metabolism, and aging play key roles in regulating these responses. Herein we review select topics that shed light on these processes and suggest new treatment strategies.
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                Author and article information

                Journal
                9502015
                8791
                Nat Med
                Nat. Med.
                Nature medicine
                1078-8956
                1546-170X
                28 February 2020
                07 October 2019
                October 2019
                26 June 2020
                : 25
                : 10
                : 1576-1588
                Affiliations
                [1 ]Department of Medicine, Cardiovascular Research Center
                [2 ]The Precision Immunology Institute
                [3 ]Human Immune Monitoring Center
                [4 ]Department of Genetics and Genomic Sciences
                [5 ]Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics
                [6 ]Department of Surgery, Vascular Division
                [7 ]Cerebrovascular Center, Department of Neurological Surgery
                [8 ]Integrated Cardio MetabolicCentre, Department of Medicine, Karolinska Institutet, Karolinska Universitetssjukhuset, Huddinge, Sweden
                [9 ]Hematology and Medical Oncology Division, The Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai
                [10 ]Department of Oncological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA
                [11 ]Present address: Innate Pharma, 117 Avenue de Luminy, 13009, Marseille, France
                [12 ]Present address: Department of Neurosurgery, Medical College of Wisconsin, WI, USA
                Author notes

                AUTHOR CONTRIBUTIONS

                Conceptualization: C.G., M.M., and A.H.R.; methodology: C.G., A.H.R., E.D.A., N.F., A.M., S.G., D.M.F. J.L.M.B.; software: E.D.A., N.F., Z.W., A.M.; formal analysis: A.H.R., D.M.F., E.D.A., N.F., Z.W., A.M. investigations: D.M.F., A.H.R., A.C., L.A., N.K., R.R., R.S., S.K-S. C.W., R.S. C.H.; Resources: J.R.L., C.P., N.M., C.F., A.J.A, J.M., P.F. and A.M.; data curation: A.H.R., D.M.F, N.F., E.D.A., S.K-S, J.L.M.B.; Writing: C.G; revision and editing: C.G., A.H.R., D.M.F., M.M., S.K-S, C.W., C. H., R.S., N.F.; data visualization: C.G., D.M.F., N.F., A.H.R., A.C., and A.M; supervision: C.G., A.H.R., S.K-S and M.M.; project administration: C.G.; funding acquisition: C.G.

                Article
                NIHMS1537678
                10.1038/s41591-019-0590-4
                7318784
                31591603
                d875cd27-d2d1-45e9-8301-9e78c298ee43

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                Article

                Medicine
                atherosclerotic plaque,t cells,macrophages,cerebrovascular events,stroke,cytof,scrna-seq,cite-seq,cell-cell interactions,il-1β,pd-1,t cell exhaustion

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