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      Roles of trans-lesion synthesis (TLS) DNA polymerases in tumorigenesis and cancer therapy

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          Abstract

          DNA damage tolerance and mutagenesis are hallmarks and enabling characteristics of neoplastic cells that drive tumorigenesis and allow cancer cells to resist therapy. The ‘Y-family’ trans-lesion synthesis (TLS) DNA polymerases enable cells to replicate damaged genomes, thereby conferring DNA damage tolerance. Moreover, Y-family DNA polymerases are inherently error-prone and cause mutations. Therefore, TLS DNA polymerases are potential mediators of important tumorigenic phenotypes. The skin cancer-propensity syndrome xeroderma pigmentosum-variant (XPV) results from defects in the Y-family DNA Polymerase Pol eta (Polη) and compensatory deployment of alternative inappropriate DNA polymerases. However, the extent to which dysregulated TLS contributes to the underlying etiology of other human cancers is unclear. Here we consider the broad impact of TLS polymerases on tumorigenesis and cancer therapy. We survey the ways in which TLS DNA polymerases are pathologically altered in cancer. We summarize evidence that TLS polymerases shape cancer genomes, and review studies implicating dysregulated TLS as a driver of carcinogenesis. Because many cancer treatment regimens comprise DNA-damaging agents, pharmacological inhibition of TLS is an attractive strategy for sensitizing tumors to genotoxic therapies. Therefore, we discuss the pharmacological tractability of the TLS pathway and summarize recent progress on development of TLS inhibitors for therapeutic purposes.

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          Hallmarks of Cancer: The Next Generation

          The hallmarks of cancer comprise six biological capabilities acquired during the multistep development of human tumors. The hallmarks constitute an organizing principle for rationalizing the complexities of neoplastic disease. They include sustaining proliferative signaling, evading growth suppressors, resisting cell death, enabling replicative immortality, inducing angiogenesis, and activating invasion and metastasis. Underlying these hallmarks are genome instability, which generates the genetic diversity that expedites their acquisition, and inflammation, which fosters multiple hallmark functions. Conceptual progress in the last decade has added two emerging hallmarks of potential generality to this list-reprogramming of energy metabolism and evading immune destruction. In addition to cancer cells, tumors exhibit another dimension of complexity: they contain a repertoire of recruited, ostensibly normal cells that contribute to the acquisition of hallmark traits by creating the "tumor microenvironment." Recognition of the widespread applicability of these concepts will increasingly affect the development of new means to treat human cancer. Copyright © 2011 Elsevier Inc. All rights reserved.
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            Proteomics. Tissue-based map of the human proteome.

            Resolving the molecular details of proteome variation in the different tissues and organs of the human body will greatly increase our knowledge of human biology and disease. Here, we present a map of the human tissue proteome based on an integrated omics approach that involves quantitative transcriptomics at the tissue and organ level, combined with tissue microarray-based immunohistochemistry, to achieve spatial localization of proteins down to the single-cell level. Our tissue-based analysis detected more than 90% of the putative protein-coding genes. We used this approach to explore the human secretome, the membrane proteome, the druggable proteome, the cancer proteome, and the metabolic functions in 32 different tissues and organs. All the data are integrated in an interactive Web-based database that allows exploration of individual proteins, as well as navigation of global expression patterns, in all major tissues and organs in the human body. Copyright © 2015, American Association for the Advancement of Science.
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              The Hallmarks of Cancer

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                Author and article information

                Contributors
                Journal
                NAR Cancer
                NAR Cancer
                narcancer
                NAR Cancer
                Oxford University Press
                2632-8674
                06 February 2023
                March 2023
                06 February 2023
                : 5
                : 1
                : zcad005
                Affiliations
                Department of Pathology and Laboratory Medicine, University of North Carolina at Chapel Hill , 614 Brinkhous-Bullitt Building, Chapel Hill, NC 27599, USA
                Department of Pathology and Laboratory Medicine, University of North Carolina at Chapel Hill , 614 Brinkhous-Bullitt Building, Chapel Hill, NC 27599, USA
                Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill , Chapel Hill, NC 27599, USA
                Department of Biochemistry, Duke University School of Medicine , Durham, NC 27710, USA
                Department of Biostatistics, University of North Carolina at Chapel Hill , 135 Dauer Drive, 3101 McGavran-Greenberg Hall, Chapel Hill, NC 27599, USA
                Department of Chemistry, Duke University , Durham, NC 27708, USA
                Department of Biostatistics, University of North Carolina at Chapel Hill , 135 Dauer Drive, 3101 McGavran-Greenberg Hall, Chapel Hill, NC 27599, USA
                Department of Biochemistry, Duke University School of Medicine , Durham, NC 27710, USA
                Department of Pathology and Laboratory Medicine, University of North Carolina at Chapel Hill , 614 Brinkhous-Bullitt Building, Chapel Hill, NC 27599, USA
                Author notes
                To whom correspondence should be addressed. Tel: +1 919 843 9639; Fax: +1 919 966 5046; Email: cyrus_vaziri@ 123456med.unc.edu

                The authors wish it to be known that, in their opinion, the first four authors should be regarded as Joint First Authors.

                Author information
                https://orcid.org/0000-0003-2071-9891
                https://orcid.org/0000-0001-8331-2357
                Article
                zcad005
                10.1093/narcan/zcad005
                9900426
                36755961
                d81f8ccc-ab2e-4717-b8d5-0b92d7df7a91
                © The Author(s) 2023. Published by Oxford University Press on behalf of NAR Cancer.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License ( https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@ 123456oup.com

                History
                : 30 January 2023
                : 10 December 2022
                : 04 October 2022
                Page count
                Pages: 24
                Funding
                Funded by: National Cancer Institute, DOI 10.13039/100000054;
                Award ID: R01 CA215347
                Award ID: R01 CA229530
                Award ID: CA191448
                Funded by: National Institute of Environmental Health Sciences, DOI 10.13039/100000066;
                Award ID: R01 ES029079
                Funded by: Duke Clinical and Translational Science Institute;
                Award ID: UL1TR002553
                Funded by: Duke Cancer Institute, DOI 10.13039/100014228;
                Funded by: P30 Cancer Center;
                Award ID: NIH CA014236
                Funded by: National Institute of General Medical Sciences, DOI 10.13039/100000057;
                Award ID: 5T32GM135128
                Categories
                AcademicSubjects/SCI00030
                AcademicSubjects/SCI00980
                AcademicSubjects/SCI01060
                AcademicSubjects/SCI01140
                AcademicSubjects/SCI01180
                Critical Reviews and Perspectives

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