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      Consequences of high temperatures and premature mortality on the transcriptome and blood physiology of wild adult sockeye salmon ( Oncorhynchus nerka)

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          Abstract

          Elevated river water temperature in the Fraser River, British Columbia, Canada, has been associated with enhanced mortality of adult sockeye salmon ( Oncorhynchus nerka) during their upriver migration to spawning grounds. We undertook a study to assess the effects of elevated water temperatures on the gill transcriptome and blood plasma variables in wild-caught sockeye salmon. Naturally migrating sockeye salmon returning to the Fraser River were collected and held at ecologically relevant temperatures of 14°C and 19°C for seven days, a period representing a significant portion of their upstream migration. After seven days, sockeye salmon held at 19°C stimulated heat shock response genes as well as many genes associated with an immune response when compared with fish held at 14°C. Additionally, fish at 19°C had elevated plasma chloride and lactate, suggestive of a disturbance in osmoregulatory homeostasis and a stress response detectable in the blood plasma. Fish that died prematurely over the course of the holding study were compared with time-matched surviving fish; the former fish were characterized by an upregulation of several transcription factors associated with apoptosis and downregulation of genes involved in immune function and antioxidant activity. Ornithine decarboxylase (ODC1) was the most significantly upregulated gene in dying salmon, which suggests an association with cellular apoptosis. We hypothesize that the observed decrease in plasma ions and increases in plasma cortisol that occur in dying fish may be linked to the increase in ODC1. By highlighting these underlying physiological mechanisms, this study enhances our understanding of the processes involved in premature mortality and temperature stress in Pacific salmon during migration to spawning grounds.

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          Most cited references53

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          Singular value decomposition for genome-wide expression data processing and modeling.

          We describe the use of singular value decomposition in transforming genome-wide expression data from genes x arrays space to reduced diagonalized "eigengenes" x "eigenarrays" space, where the eigengenes (or eigenarrays) are unique orthonormal superpositions of the genes (or arrays). Normalizing the data by filtering out the eigengenes (and eigenarrays) that are inferred to represent noise or experimental artifacts enables meaningful comparison of the expression of different genes across different arrays in different experiments. Sorting the data according to the eigengenes and eigenarrays gives a global picture of the dynamics of gene expression, in which individual genes and arrays appear to be classified into groups of similar regulation and function, or similar cellular state and biological phenotype, respectively. After normalization and sorting, the significant eigengenes and eigenarrays can be associated with observed genome-wide effects of regulators, or with measured samples, in which these regulators are overactive or underactive, respectively.
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            Invited review: Effects of heat and cold stress on mammalian gene expression.

            This review examines the effects of thermal stress on gene expression, with special emphasis on changes in the expression of genes other than heat shock proteins (HSPs). There are approximately 50 genes not traditionally considered to be HSPs that have been shown, by conventional techniques, to change expression as a result of heat stress, and there are <20 genes (including HSPs) that have been shown to be affected by cold. These numbers will likely become much larger as gene chip array and proteomic technologies are applied to the study of the cell stress response. Several mechanisms have been identified by which gene expression may be altered by heat and cold stress. The similarities and differences between the cellular responses to heat and cold may yield key insights into how cells, and by extension tissues and organisms, survive and adapt to stress.
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              Biostatistical analysis

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                Author and article information

                Journal
                Ecol Evol
                Ecol Evol
                ece3
                Ecology and Evolution
                Blackwell Publishing Ltd (Oxford, UK )
                2045-7758
                2045-7758
                July 2012
                : 2
                : 7
                : 1747-1764
                Affiliations
                [1 ]Centre for Applied Conservation Research and Department of Forest Sciences, University of British Columbia 2424 Main Mall, Vancouver, BC, V6T 1Z4, Canada
                [2 ]Department of Psychiatry, Centre for High-Throughput Biology, University of British Columbia 2125 East Mall, Vancouver, BC, V6T 1Z4, Canada
                [3 ]Australian Institute of Marine Science PMB 3, Townsville MC, Townsville, QLD 4810, Australia
                [4 ]Department of Zoology, University of British Columbia 6270 University Blvd., Vancouver, BC, V6T 1Z4, Canada
                [5 ]Fisheries and Oceans Canada, Molecular Genetics Section Pacific Biological Station, 3190 Hammond Bay Road, Nanaimo, BC, V9T 6N7, Canada
                Author notes
                Ken M. Jeffries, Centre for Applied Conservation Research and Department of Forest Sciences, University of British Columbia, 2424 Main Mall, Vancouver, BC, V6T 1Z4, Canada. Tel: +1 604 822 1969; Fax: +1 604 822 9102; E-mail: kenmjeffries@ 123456gmail.com

                Funded by the Natural Sciences and Engineering Council of Canada and Genome British Columbia.

                Article
                10.1002/ece3.274
                3434914
                22957178
                d7706e26-eef5-491a-86a2-d35fdde66a71
                © 2012 The Authors. Published by Blackwell Publishing Ltd.

                Re-use of this article is permitted in accordance with the Creative Commons Deed, Attribution 2.5, which does not permit commercial exploitation.

                History
                : 12 January 2012
                : 02 April 2012
                : 09 April 2012
                Categories
                Original Research

                Evolutionary Biology
                temperature,premature mortality,stress,ecological genomics,spawning migration,pacific salmon

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