Vivek K. Mutalik:
ORCID: https://orcid.org/0000-0001-7934-0400
Role: ConceptualizationRole: Data curationRole: Formal analysisRole: Funding acquisitionRole:
InvestigationRole: MethodologyRole: Project administrationRole: ResourcesRole: SupervisionRole:
ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review
& editing
Benjamin A. Adler:
ORCID: https://orcid.org/0000-0002-7488-3040
Role: Formal analysisRole: InvestigationRole: MethodologyRole: ValidationRole: VisualizationRole:
Writing – review & editing
Harneet S. Rishi: Role: Formal analysisRole: InvestigationRole: MethodologyRole: ResourcesRole: Writing
– review & editing
Denish Piya:
ORCID: https://orcid.org/0000-0001-8495-4511
Role: InvestigationRole: MethodologyRole: ValidationRole: Writing – review & editing
Crystal Zhong: Role: Investigation
Britt Koskella:
ORCID: https://orcid.org/0000-0003-1760-8496
Role: InvestigationRole: MethodologyRole: Writing – review & editing
Elizabeth M. Kutter: Role: MethodologyRole: Resources
Richard Calendar: Role: ResourcesRole: Writing – review & editing
Pavel S. Novichkov: Role: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole:
Software
Morgan N. Price:
ORCID: https://orcid.org/0000-0002-4251-0362
Role: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole:
SoftwareRole: Writing – review & editing
Adam M. Deutschbauer: Role: Formal analysisRole: InvestigationRole: MethodologyRole: ResourcesRole: ValidationRole:
Writing – review & editing
Adam P. Arkin: Role: ConceptualizationRole: Data curationRole: Formal analysisRole: Funding acquisitionRole:
InvestigationRole: MethodologyRole: Project administrationRole: SupervisionRole: VisualizationRole:
Writing – review & editing
J. Arjan G. M. de Visser: Role: Academic Editor
Journal ID (nlm-ta): PLoS Biol
Journal ID (iso-abbrev): PLoS Biol
Journal ID (publisher-id): plos
Journal ID (pmc): plosbiol
Title:
PLoS Biology
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Print):
1544-9173
ISSN
(Electronic):
1545-7885
Publication date
(Electronic):
13
October
2020
Publication date Collection:
October
2020
Publication date PMC-release: 13
October
2020
Volume: 18
Issue: 10
Electronic Location Identifier: e3000877
Affiliations
[1
]
Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory,
Berkeley, California, United States of America
[2
]
Innovative Genomics Institute, Berkeley, California, United States of America
[3
]
Department of Bioengineering, University of California – Berkeley, Berkeley, California,
United States of America
[4
]
Biophysics Graduate Group, University of California – Berkeley, Berkeley, California,
United States of America
[5
]
Designated Emphasis Program in Computational and Genomic Biology, University of California
– Berkeley, Berkeley, California, United States of America
[6
]
Department of Integrative Biology, University of California – Berkeley, Berkeley,
California, United States of America
[7
]
The Evergreen State College, Olympia, Washington, United States of America
[8
]
Department of Molecular and Cell Biology, University of California – Berkeley, Berkeley,
California, United States of America
[9
]
Department of Plant and Microbial Biology, University of California – Berkeley, Berkeley,
California, United States of America
Wageningen University, NETHERLANDS
Author notes
I have read the journal’s policy and the authors of this manuscript have the following
competing interests: VKM, AMD, and APA consult for and hold equity in Felix Biotechnology,
Inc.
Author information
Article
Publisher ID:
PBIOLOGY-D-20-00974
DOI: 10.1371/journal.pbio.3000877
PMC ID: 7553319
PubMed ID: 33048924
SO-VID: d708de57-3573-4ef8-9436-dbb11836701e
Copyright © © 2020 Mutalik et al
License:
This is an open access article distributed under the terms of the
Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided
the original author and source are credited.
Funded by: funder-id http://dx.doi.org/10.13039/100014220, Innovative Genomics Institute;
Award Recipient
:
ORCID: https://orcid.org/0000-0001-7934-0400
Vivek K. Mutalik
Funded by: funder-id http://dx.doi.org/10.13039/100000015, U.S. Department of Energy;
Award ID: DE-AC02-05CH11231
Award Recipient
:
Adam P. Arkin
This project was funded by the Microbiology Program of the Innovative Genomics Institute,
Berkeley (to VKM, AMD, and APA). The initial concepts for this project were funded
by ENIGMA, a Scientific Focus Area Program at the Lawrence Berkeley National Laboratory,
supported by the US Department of Energy, Office of Science, Office of Biological
and Environmental Research under contract DE-AC02-05CH11231 (to VKM, AMD, and APA).
The funders had no role in study design, data collection and analysis, decision to
publish, or preparation of the manuscript.
Subject:
Research Article
Subject:
Biology and Life Sciences
Subject:
Organisms
Subject:
Viruses
Subject:
Bacteriophages
Subject:
Biology and life sciences
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Molecular biology
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Molecular biology techniques
Subject:
Cloning
Subject:
DNA cloning
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Shotgun Sequencing
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Research and analysis methods
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Molecular biology techniques
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Cloning
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DNA cloning
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Shotgun Sequencing
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Biology and Life Sciences
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Molecular Biology
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Molecular Biology Techniques
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Sequencing Techniques
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Shotgun Sequencing
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Research and Analysis Methods
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Molecular Biology Techniques
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Sequencing Techniques
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Shotgun Sequencing
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Biology and Life Sciences
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Genetics
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Gene Identification and Analysis
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Genetic Screens
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Biology and Life Sciences
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Molecular Biology
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Molecular Biology Techniques
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Molecular Biology Assays and Analysis Techniques
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Gene Expression and Vector Techniques
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Hyperexpression Techniques
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Research and Analysis Methods
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Molecular Biology Techniques
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Molecular Biology Assays and Analysis Techniques
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Gene Expression and Vector Techniques
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Hyperexpression Techniques
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Biology and Life Sciences
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Genetics
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Genomics
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Biology and Life Sciences
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Biochemistry
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Biosynthesis
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Biology and life sciences
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Molecular biology
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Molecular biology techniques
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Sequencing techniques
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RNA sequencing
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Research and analysis methods
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Molecular biology techniques
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Sequencing techniques
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RNA sequencing
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Biology and Life Sciences
Subject:
Computational Biology
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Genome Analysis
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Genomic Libraries
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Biology and Life Sciences
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Genetics
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Genomics
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Genome Analysis
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Genomic Libraries