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      Sampling re-design increases power to detect change in the Great Barrier Reef’s inshore water quality

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          Abstract

          Monitoring programs are fundamental to understanding the state and trend of aquatic ecosystems. Sampling designs are a crucial component of monitoring programs and ensure that measurements evaluate progress toward clearly stated management objectives, which provides a mechanism for adaptive management. Here, we use a well-established marine monitoring program for inshore water quality in the Great Barrier Reef (GBR), Australia to investigate whether a sampling re-design has increased the program’s capacity to meet its primary objectives. Specifically, we use bootstrap resampling to assess the change in statistical power to detect temporal water quality trends in a 15-year inshore marine water quality data set that includes data from both before and after the sampling re-design. We perform a comprehensive power analysis for six water quality analytes at four separate study areas in the GBR Marine Park and find that the sampling re-design (i) increased power to detect trends in 23 of the 24 analyte-study area combinations, and (ii) resulted in an average increase in power of 34% to detect increasing or decreasing trends in water quality analytes. This increase in power is attributed more to the addition of sampling locations than increasing the sampling rate. Therefore, the sampling re-design has substantially increased the capacity of the program to detect temporal trends in inshore marine water quality. Further improvements in sampling design need to focus on the program’s capability to reliably detect trends within realistic timeframes where inshore improvements to water quality can be expected to occur.

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          Most cited references73

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          Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

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            Coral reefs in the Anthropocene

            Coral reefs support immense biodiversity and provide important ecosystem services to many millions of people. Yet reefs are degrading rapidly in response to numerous anthropogenic drivers. In the coming centuries, reefs will run the gauntlet of climate change, and rising temperatures will transform them into
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              Global warming transforms coral reef assemblages

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                Author and article information

                Contributors
                Role: Data curationRole: Formal analysisRole: MethodologyRole: SoftwareRole: ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Funding acquisitionRole: MethodologyRole: Project administrationRole: Writing – review & editing
                Role: ConceptualizationRole: Funding acquisitionRole: MethodologyRole: Writing – review & editing
                Role: Data curationRole: ResourcesRole: Writing – review & editing
                Role: Data curationRole: ResourcesRole: Writing – review & editing
                Role: Data curationRole: Funding acquisitionRole: ResourcesRole: Writing – review & editing
                Role: ConceptualizationRole: Funding acquisitionRole: InvestigationRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS One
                PLoS One
                plos
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                28 July 2022
                2022
                : 17
                : 7
                : e0271930
                Affiliations
                [1 ] Data61, Commonwealth Scientific and Industrial Research Organisation, Brisbane, Queensland, Australia
                [2 ] Centre for Tropical Water & Aquatic Ecosystem Research, James Cook University, Townsville, Queensland, Australia
                [3 ] Australian Institute of Marine Science, Townsville, Queensland, Australia
                Đại Học Duy Tân: Dai Hoc Duy Tan, VIET NAM
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                https://orcid.org/0000-0002-0229-0625
                https://orcid.org/0000-0001-9070-0091
                https://orcid.org/0000-0002-8788-6910
                Article
                PONE-D-22-03110
                10.1371/journal.pone.0271930
                9333274
                35901047
                d69a7ab0-6bc1-4cd5-9d42-cc6e0bd35c7d
                © 2022 Lloyd-Jones et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 31 January 2022
                : 1 July 2022
                Page count
                Figures: 4, Tables: 1, Pages: 23
                Funding
                Funded by: Australian Government’s Reef Trust
                Funded by: Great Barrier Reef Foundation
                This project is a component of the Fitzroy Basin Marine Monitoring Program for Inshore Water Quality, which is funded by the partnership between the Australian Government’s Reef Trust and the Great Barrier Reef Foundation, with support from the Australian Institute of Marine Science (AIMS) and the CSIRO. The MMP WQ data examined in this project were collected with financial support from the Great Barrier Reef Marine Park Authority, AIMS, and James Cook University (JCU). The Great Barrier Reef Foundation and the Great Barrier Reef Marine Park Authority had no role in the design of this particular study, data collection and analysis, the decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Ecology and Environmental Sciences
                Water Quality
                Earth Sciences
                Marine and Aquatic Sciences
                Marine Monitoring
                Biology and Life Sciences
                Marine Biology
                Marine Monitoring
                Earth Sciences
                Marine and Aquatic Sciences
                Marine Biology
                Marine Monitoring
                Biology and Life Sciences
                Marine Biology
                Coral Reefs
                Earth Sciences
                Marine and Aquatic Sciences
                Marine Biology
                Coral Reefs
                Earth Sciences
                Marine and Aquatic Sciences
                Reefs
                Coral Reefs
                Ecology and Environmental Sciences
                Aquatic Environments
                Marine Environments
                Sea Water
                Earth Sciences
                Marine and Aquatic Sciences
                Aquatic Environments
                Marine Environments
                Sea Water
                Physical Sciences
                Mathematics
                Applied Mathematics
                Algorithms
                Research and Analysis Methods
                Simulation and Modeling
                Algorithms
                Earth Sciences
                Seasons
                Earth Sciences
                Marine and Aquatic Sciences
                Bodies of Water
                Rivers
                Ecology and Environmental Sciences
                Aquatic Environments
                Freshwater Environments
                Rivers
                Earth Sciences
                Marine and Aquatic Sciences
                Aquatic Environments
                Freshwater Environments
                Rivers
                Physical Sciences
                Materials Science
                Materials
                Mixtures
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                Custom metadata
                An R Shiny application accompanies this manuscript and allows for exploration of visual summaries of the data and results. The app is available at https://shiny.csiro.au/MMPdesignE/, deployed from https://github.com/pkuhnert/MMPdesignE and viewed at https://doi.org/10.25919/9kj9-3r31. Code used and summary results generated are available at https://github.com/lukelloydjones/mmp_power. Results of the present study were generated from R version 4.0.2. The minimal data set for this study has been deposited at https://doi.org/10.25919/ddq5-9j38.

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